Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MT340_RS04120 Genome accession   NZ_CP119327
Coordinates   857457..857855 (+) Length   132 a.a.
NCBI ID   WP_243588894.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 16/872     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 852457..862855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT340_RS04090 (MT340_004090) - 852668..853069 (+) 402 WP_243588890.1 F0F1 ATP synthase subunit epsilon -
  MT340_RS04095 (MT340_004095) - 853251..854567 (+) 1317 WP_243588769.1 ISL3 family transposase -
  MT340_RS04100 (MT340_004100) - 854694..854927 (+) 234 WP_243588891.1 DUF1146 family protein -
  MT340_RS04105 (MT340_004105) murA 855033..856298 (+) 1266 WP_243588892.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MT340_RS04110 (MT340_004110) fabZ 856341..856778 (+) 438 WP_103298003.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MT340_RS04115 (MT340_004115) - 856827..857270 (-) 444 WP_243588893.1 YwpF-like family protein -
  MT340_RS04120 (MT340_004120) ssb 857457..857855 (+) 399 WP_243588894.1 single-stranded DNA-binding protein Machinery gene
  MT340_RS04125 (MT340_004125) - 858222..858938 (+) 717 WP_243588895.1 transglycosylase family protein -
  MT340_RS04130 (MT340_004130) tenA 859214..859903 (+) 690 WP_243588896.1 thiaminase II -
  MT340_RS04135 (MT340_004135) thiD 859896..860717 (+) 822 WP_243588897.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MT340_RS04140 (MT340_004140) thiM 860710..861501 (+) 792 WP_243588898.1 hydroxyethylthiazole kinase -
  MT340_RS04145 (MT340_004145) thiE 861502..862140 (+) 639 WP_243588899.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15169.18 Da        Isoelectric Point: 4.9662

>NTDB_id=798476 MT340_RS04120 WP_243588894.1 857457..857855(+) (ssb) [Staphylococcus sp. NRL 16/872]
MLNKIVIVGRMTKDAQIYEKEEVKIATFSVATERNYKDDNNEIVCDYIFCKAFGKTATNIEKYTSQGSLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPQSKNNEILSNSSFIEDTYPLDNLDIININ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=798476 MT340_RS04120 WP_243588894.1 857457..857855(+) (ssb) [Staphylococcus sp. NRL 16/872]
ATGCTAAATAAGATAGTAATTGTAGGTCGTATGACTAAAGATGCTCAAATCTATGAAAAGGAAGAGGTGAAAATTGCTAC
CTTTAGCGTTGCAACTGAACGTAATTACAAAGACGATAATAATGAAATTGTTTGTGACTATATTTTTTGTAAAGCTTTTG
GCAAAACAGCAACGAATATCGAAAAATATACTAGTCAAGGTTCATTAGTAGGTATCACTGGCCAGATGCGTTCACGCAAG
TATGAAAAAGAAGGGCAAACGCATTTTGTAACAGAATTATATGTAGAAACTATAAAATTTATGTCCCCACAATCTAAAAA
TAACGAAATTCTCTCAAATAGCTCGTTTATTGAAGACACTTATCCCCTAGATAATCTAGACATTATTAATATTAATTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

77.099

99.242

0.765
  ssb Staphylococcus aureus MW2

76.336

99.242

0.758