Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PY372_RS10485 Genome accession   NZ_CP119301
Coordinates   2240514..2241917 (-) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2235514..2246917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS10450 (PY372_10625) moaE 2236085..2236540 (-) 456 WP_015297054.1 molybdopterin synthase catalytic subunit MoaE -
  PY372_RS10455 (PY372_10630) moaD 2236542..2236799 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  PY372_RS10460 (PY372_10635) moaC 2236796..2237275 (-) 480 WP_005488247.1 cyclic pyranopterin monophosphate synthase MoaC -
  PY372_RS10465 (PY372_10640) moaB 2237302..2237814 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  PY372_RS10470 (PY372_10645) moaA 2237918..2238907 (-) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  PY372_RS10475 (PY372_10650) - 2239203..2240096 (+) 894 WP_017447831.1 YvcK family protein -
  PY372_RS10480 (PY372_10655) luxU 2240173..2240511 (-) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  PY372_RS10485 (PY372_10660) luxO 2240514..2241917 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PY372_RS10490 (PY372_10665) uvrB 2242207..2244237 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  PY372_RS10500 (PY372_10675) rsxA 2245228..2245806 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  PY372_RS10505 (PY372_10680) rsxB 2245810..2246406 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=798392 PY372_RS10485 WP_005461534.1 2240514..2241917(-) (luxO) [Vibrio parahaemolyticus strain LC]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=798392 PY372_RS10485 WP_005461534.1 2240514..2241917(-) (luxO) [Vibrio parahaemolyticus strain LC]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTTTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCACCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCGGCCATACCTAAAGACTTAATCGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACCTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGACGTTTCCGCGAAGACTTATACTACCGGTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368