Detailed information NTG0798313

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PZ484_RS24155
• Genome accession: NZ_CP119298
• Coordinates: 5193911..5194783 (+)
• Length: 290 a.a.
• NCBI ID: WP_024928730.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain SNDPR-01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5188911..5199783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PZ484_RS24130	nadC	5189274..5190122 (+)	849	WP_003161760.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PZ484_RS24140	pilA	5190299..5190751 (-)	453	WP_024928732.1	pilin	Machinery gene
PZ484_RS24145	pilB	5190983..5192683 (+)	1701	WP_024928731.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PZ484_RS24150	pilC	5192687..5193907 (+)	1221	WP_009315898.1	type 4a pilus biogenesis protein PilC	Machinery gene
PZ484_RS24155	pilD	5193911..5194783 (+)	873	WP_024928730.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PZ484_RS24160	coaE	5194780..5195391 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PZ484_RS24165	yacG	5195388..5195588 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PZ484_RS24170	-	5195625..5195834 (-)	210	WP_003094660.1	hypothetical protein	-
PZ484_RS24175	-	5195940..5196629 (-)	690	WP_034073021.1	energy-coupling factor ABC transporter permease	-
PZ484_RS24180	-	5196626..5197096 (-)	471	WP_003094664.1	hypothetical protein	-
PZ484_RS24185	-	5197093..5197518 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PZ484_RS24190	-	5197651..5198280 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PZ484_RS24195	-	5198277..5198726 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PZ484_RS24200	-	5198752..5198922 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31867.94 Da
• Isoelectric Point: 7.7068

>NTDB_id=798313 PZ484_RS24155 WP_024928730.1 5193911..5194783(+) (pilD) [Pseudomonas aeruginosa strain SNDPR-01]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNVESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=798313 PZ484_RS24155 WP_024928730.1 5193911..5194783(+) (pilD) [Pseudomonas aeruginosa strain SNDPR-01]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAATGTCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476