Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PY247_RS07720 Genome accession   NZ_CP119223
Coordinates   1623255..1623938 (-) Length   227 a.a.
NCBI ID   WP_275573916.1    Uniprot ID   -
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1618255..1628938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS07685 (PY247_07685) - 1618911..1619585 (+) 675 WP_004657639.1 outer membrane lipid asymmetry maintenance protein MlaD -
  PY247_RS07690 (PY247_07690) - 1619605..1620237 (+) 633 WP_004657642.1 ABC transporter substrate-binding protein -
  PY247_RS07695 (PY247_07695) - 1620249..1620536 (+) 288 WP_004657643.1 STAS domain-containing protein -
  PY247_RS07700 (PY247_07700) - 1620590..1621134 (-) 545 Protein_1492 hypothetical protein -
  PY247_RS07705 (PY247_07705) - 1621125..1622138 (-) 1014 WP_004657647.1 magnesium and cobalt transport protein CorA -
  PY247_RS07710 (PY247_07710) - 1622311..1622895 (+) 585 WP_004657648.1 TIGR00730 family Rossman fold protein -
  PY247_RS07715 (PY247_07715) - 1622906..1623301 (+) 396 WP_004657650.1 NUDIX domain-containing protein -
  PY247_RS07720 (PY247_07720) comF 1623255..1623938 (-) 684 WP_275573916.1 phosphoribosyltransferase family protein Machinery gene
  PY247_RS07725 (PY247_07725) recG 1623931..1625976 (-) 2046 WP_004657653.1 ATP-dependent DNA helicase RecG -
  PY247_RS07730 (PY247_07730) - 1625995..1626814 (+) 820 Protein_1498 NAD(P)H-binding protein -
  PY247_RS07735 (PY247_07735) - 1626941..1627921 (+) 981 WP_070076015.1 putative solute-binding protein -
  PY247_RS07740 (PY247_07740) - 1628001..1628696 (-) 696 WP_275573917.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25813.94 Da        Isoelectric Point: 9.0261

>NTDB_id=798220 PY247_RS07720 WP_275573916.1 1623255..1623938(-) (comF) [Acinetobacter proteolyticus strain AP54]
MFKRLGTSAQQIFDYFTPCNLCDIGMKRQFGVCHSCWQQLPWLKQSIERNQQQVLVACHYHYPIDRIIQQFKYEQKLHQQ
RLLDGLLLQLKLPNVHAIVPMPISADRLAERGFNQTLLLAKVLSKSLNIPVWQPVQRLAQHSQKGLSRLERLEDIEQQFV
AAPPNSIRYRKVLIVDDVLTTGSSISALSKVLTQLGCQQIYSACVAAAQTQPTNSLDFAGTTESQLL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=798220 PY247_RS07720 WP_275573916.1 1623255..1623938(-) (comF) [Acinetobacter proteolyticus strain AP54]
ATGTTTAAAAGACTTGGCACATCAGCACAGCAGATTTTTGATTATTTTACGCCTTGTAATCTCTGTGATATCGGCATGAA
ACGTCAATTTGGTGTATGCCACAGTTGCTGGCAACAATTGCCTTGGCTCAAACAAAGCATTGAACGTAACCAGCAACAGG
TCTTGGTTGCTTGCCATTATCACTATCCAATTGATCGGATCATTCAACAATTCAAATATGAGCAGAAACTGCACCAGCAA
AGACTATTAGATGGCCTGCTATTACAACTAAAACTCCCCAACGTGCATGCGATTGTACCGATGCCGATTTCGGCTGATCG
TCTAGCAGAACGCGGCTTTAATCAAACCCTTCTTCTCGCCAAGGTATTGAGCAAAAGCTTGAATATCCCCGTTTGGCAAC
CCGTACAACGCTTGGCCCAACACTCACAAAAAGGCCTGTCACGTTTAGAACGACTCGAAGATATTGAACAGCAATTTGTG
GCAGCACCGCCCAACTCAATTCGTTATCGCAAAGTCCTCATTGTCGATGATGTGCTGACCACAGGCAGTTCGATCAGCGC
ATTATCCAAAGTCCTGACCCAACTCGGCTGCCAACAGATTTATAGTGCCTGCGTAGCAGCCGCACAAACACAACCGACTA
ACTCGCTTGATTTTGCTGGCACCACGGAATCACAACTTCTTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.19

92.511

0.612
  comF Acinetobacter baumannii D1279779

65.714

92.511

0.608