Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PXV46_RS06890 Genome accession   NZ_CP119113
Coordinates   1366667..1367539 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GENOMIC22-002     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1361667..1372539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXV46_RS06860 (PXV46_06860) - 1361814..1362581 (+) 768 WP_000176395.1 ribonuclease HII -
  PXV46_RS06865 (PXV46_06865) sucC 1362690..1363856 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  PXV46_RS06870 (PXV46_06870) sucD 1363878..1364786 (+) 909 WP_000110258.1 succinate--CoA ligase subunit alpha -
  PXV46_RS06875 (PXV46_06875) - 1365013..1365068 (+) 56 Protein_1348 YSIRK-type signal peptide-containing protein -
  PXV46_RS06880 (PXV46_06880) - 1365073..1365225 (+) 153 Protein_1349 cell wall hydrolase -
  PXV46_RS06885 (PXV46_06885) fmhC 1365253..1366496 (+) 1244 Protein_1350 FemA/FemB family glycyltransferase FmhC -
  PXV46_RS06890 (PXV46_06890) dprA 1366667..1367539 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  PXV46_RS06895 (PXV46_06895) topA 1367713..1369788 (+) 2076 WP_001807811.1 type I DNA topoisomerase -
  PXV46_RS06900 (PXV46_06900) trmFO 1369944..1371250 (+) 1307 Protein_1353 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=797731 PXV46_RS06890 WP_000620182.1 1366667..1367539(+) (dprA) [Staphylococcus aureus strain GENOMIC22-002]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=797731 PXV46_RS06890 WP_000620182.1 1366667..1367539(+) (dprA) [Staphylococcus aureus strain GENOMIC22-002]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986