NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	PXV46_RS02310	Genome accession	NZ_CP119113
Coordinates	472032..472535 (+)	Length	167 a.a.
NCBI ID	WP_000934799.1	Uniprot ID	A0A7U7IE99
Organism	Staphylococcus aureus strain GENOMIC22-002
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 467032..477535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PXV46_RS02280 (PXV46_02280)	-	467972..468817 (+)	846	WP_001825659.1	ParB/RepB/Spo0J family partition protein	-
PXV46_RS02285 (PXV46_02285)	-	468971..469852 (+)	882	WP_000373073.1	mechanosensitive ion channel family protein	-
PXV46_RS02290 (PXV46_02290)	-	469882..470085 (+)	204	WP_000157348.1	DUF951 domain-containing protein	-
PXV46_RS02295 (PXV46_02295)	ychF	470097..471194 (+)	1098	WP_001218732.1	redox-regulated ATPase YchF	-
PXV46_RS02300 (PXV46_02300)	-	471280..471471 (-)	192	WP_001052481.1	hypothetical protein	-
PXV46_RS02305 (PXV46_02305)	rpsF	471715..472011 (+)	297	WP_001261460.1	30S ribosomal protein S6	-
PXV46_RS02310 (PXV46_02310)	ssbA	472032..472535 (+)	504	WP_000934799.1	single-stranded DNA-binding protein	Machinery gene
PXV46_RS02315 (PXV46_02315)	rpsR	472587..472829 (+)	243	WP_000897044.1	30S ribosomal protein S18	-
PXV46_RS02320 (PXV46_02320)	-	473286..473506 (-)	221	Protein_461	site-specific integrase	-
PXV46_RS02325 (PXV46_02325)	-	473641..473955 (+)	315	Protein_462	toxin	-
PXV46_RS02330 (PXV46_02330)	-	474321..474689 (+)	369	WP_000849160.1	YxeA family protein	-
PXV46_RS02335 (PXV46_02335)	-	474869..475441 (+)	573	WP_000769718.1	PepSY domain-containing protein	-
PXV46_RS02340 (PXV46_02340)	-	475579..475842 (-)	264	WP_001055897.1	helix-turn-helix transcriptional regulator	-
PXV46_RS02345 (PXV46_02345)	-	476136..476387 (+)	252	WP_000466741.1	GlsB/YeaQ/YmgE family stress response membrane protein	-
PXV46_RS02350 (PXV46_02350)	-	476429..476637 (-)	209	Protein_467	hypothetical protein	-
PXV46_RS02355 (PXV46_02355)	-	476815..477396 (+)	582	WP_000158385.1	histidine phosphatase family protein	-

Sequence

Protein

Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305

                                >NTDB_id=797718 PXV46_RS02310 WP_000934799.1 472032..472535(+) (ssbA) [Staphylococcus aureus strain GENOMIC22-002]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR

NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI

SDDDLPF

Nucleotide

Download Length: 504 bp

                                >NTDB_id=797718 PXV46_RS02310 WP_000934799.1 472032..472535(+) (ssbA) [Staphylococcus aureus strain GENOMIC22-002]

ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC

GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT

TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT

AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA

TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA

AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.341	100	0.689
ssb	Latilactobacillus sakei subsp. sakei 23K	54.971	100	0.563
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.473	0.371
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.365

Detailed information NTG0797718