Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PU629_RS00110 Genome accession   NZ_CP119107
Coordinates   20386..20913 (+) Length   175 a.a.
NCBI ID   WP_275282234.1    Uniprot ID   -
Organism   Pullulanibacillus sp. KACC 23026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 15386..25913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU629_RS00085 (PU629_00085) - 15817..16470 (+) 654 WP_275282229.1 response regulator transcription factor -
  PU629_RS00090 (PU629_00090) - 16888..18270 (+) 1383 WP_275282230.1 glycine--tRNA ligase -
  PU629_RS00095 (PU629_00095) - 18296..18496 (+) 201 WP_275282231.1 DUF951 domain-containing protein -
  PU629_RS00100 (PU629_00100) ychF 18783..19883 (+) 1101 WP_275282232.1 redox-regulated ATPase YchF -
  PU629_RS00105 (PU629_00105) rpsF 20070..20363 (+) 294 WP_275282233.1 30S ribosomal protein S6 -
  PU629_RS00110 (PU629_00110) ssbA 20386..20913 (+) 528 WP_275282234.1 single-stranded DNA-binding protein Machinery gene
  PU629_RS00115 (PU629_00115) rpsR 20934..21161 (+) 228 WP_275282235.1 30S ribosomal protein S18 -
  PU629_RS00120 (PU629_00120) - 21278..21463 (+) 186 WP_275282236.1 hypothetical protein -
  PU629_RS00125 (PU629_00125) - 22896..23903 (+) 1008 WP_275282237.1 asparaginase -
  PU629_RS00130 (PU629_00130) - 24134..25078 (-) 945 WP_275282238.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19010.81 Da        Isoelectric Point: 4.7629

>NTDB_id=797629 PU629_RS00110 WP_275282234.1 20386..20913(+) (ssbA) [Pullulanibacillus sp. KACC 23026]
MINRVVLVGRLTRDPELRYTPNGVAVANFTIAVNRPFSNQQGERDADFISIVVWRRQAENVANFVGKGSLVGIDGRLQTR
SYDNNEGKRVYITEVVADSVQFLESKGQRGTAPSGATPYQSSGSGSQANYQQPSGGAPKRNQGQGSNPFEDPFGNDDPFA
NDGKPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=797629 PU629_RS00110 WP_275282234.1 20386..20913(+) (ssbA) [Pullulanibacillus sp. KACC 23026]
ATGATTAATCGAGTGGTGTTGGTTGGCCGGTTAACACGAGACCCTGAATTACGTTATACGCCAAACGGAGTGGCTGTTGC
TAACTTTACAATTGCTGTCAATCGCCCTTTTTCTAATCAGCAAGGAGAGCGCGATGCCGATTTTATCTCAATCGTGGTAT
GGCGCAGACAAGCTGAGAATGTGGCTAATTTTGTTGGCAAGGGTAGTTTAGTAGGGATTGATGGCCGGCTTCAAACGCGC
AGTTATGATAATAATGAAGGTAAACGTGTTTATATTACAGAAGTTGTCGCAGATAGTGTTCAATTTTTGGAATCAAAAGG
ACAAAGAGGTACAGCACCATCAGGGGCTACCCCTTATCAATCATCAGGATCAGGCTCTCAAGCTAATTATCAACAACCAT
CAGGTGGAGCTCCAAAACGTAATCAGGGTCAAGGCTCTAATCCGTTTGAAGATCCATTTGGAAATGATGATCCGTTTGCT
AATGATGGCAAACCTATAGATATTTCCGATGATGACTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.889

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

54.396

100

0.566