Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PX653_RS08380 Genome accession   NZ_CP119083
Coordinates   1922469..1923272 (+) Length   267 a.a.
NCBI ID   WP_277417434.1    Uniprot ID   -
Organism   Pseudoduganella chitinolytica strain ACM 3522     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1917469..1928272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX653_RS08355 (PX653_08355) phaR 1917676..1918242 (-) 567 WP_277417431.1 polyhydroxyalkanoate synthesis repressor PhaR -
  PX653_RS08360 (PX653_08360) phaC 1918496..1920226 (-) 1731 WP_277417432.1 class I poly(R)-hydroxyalkanoic acid synthase -
  PX653_RS08365 (PX653_08365) - 1920219..1920485 (+) 267 WP_307731047.1 hypothetical protein -
  PX653_RS08370 (PX653_08370) pgeF 1920499..1921296 (-) 798 WP_277417433.1 peptidoglycan editing factor PgeF -
  PX653_RS08375 (PX653_08375) - 1921293..1922402 (-) 1110 WP_371876434.1 RluA family pseudouridine synthase -
  PX653_RS08380 (PX653_08380) comL 1922469..1923272 (+) 804 WP_277417434.1 outer membrane protein assembly factor BamD Machinery gene
  PX653_RS08385 (PX653_08385) yaaA 1923385..1924149 (-) 765 WP_277417435.1 peroxide stress protein YaaA -
  PX653_RS08390 (PX653_08390) - 1924198..1924665 (+) 468 WP_277417436.1 putative toxin-antitoxin system toxin component, PIN family -
  PX653_RS08395 (PX653_08395) - 1925000..1926625 (+) 1626 WP_277417437.1 EAL domain-containing protein -
  PX653_RS08400 (PX653_08400) - 1926622..1926951 (+) 330 WP_277417438.1 hypothetical protein -
  PX653_RS08405 (PX653_08405) - 1926948..1927793 (+) 846 WP_307731048.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31005.23 Da        Isoelectric Point: 8.8384

>NTDB_id=797583 PX653_RS08380 WP_277417434.1 1922469..1923272(+) (comL) [Pseudoduganella chitinolytica strain ACM 3522]
MQKKIKVVAATVALLSLSACGLLPEQSDETKGWSATKLYSEAKEEMAGQHYERAIQLYEKLEASYPFGVYAQQAQMEVAY
AYYKAQDQAQALAAVERFIKLHPNHPNVDYMYYLRGLVNFNDQLSLLNFVYEQDPAERDPKATREAFAAFKALVDKFPNS
KYTPDAVDRMKYLINAMAKYEVYVARYYYRRGAYLAAANRAQEAVRDYRDSPSVEEALWIMARSYDKLGNTTLRDDTMRV
FKLNFPNSKFLEEGAPKQERKWWKFWS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=797583 PX653_RS08380 WP_277417434.1 1922469..1923272(+) (comL) [Pseudoduganella chitinolytica strain ACM 3522]
ATGCAAAAAAAAATCAAGGTGGTGGCAGCAACGGTAGCACTGCTCAGTTTGTCGGCCTGCGGCCTGCTGCCTGAACAGTC
CGACGAGACCAAAGGCTGGTCCGCAACGAAATTATACTCGGAGGCCAAGGAAGAAATGGCCGGCCAGCACTACGAGCGTG
CAATCCAGCTGTACGAGAAGCTCGAAGCCAGCTATCCGTTCGGCGTGTACGCCCAGCAGGCGCAGATGGAAGTGGCCTAT
GCCTACTACAAGGCACAGGACCAGGCCCAGGCGCTGGCGGCCGTGGAGCGCTTCATCAAGCTGCACCCGAACCATCCGAA
TGTCGACTACATGTACTACCTGCGCGGCCTGGTCAATTTCAATGACCAGCTGAGCCTGTTGAACTTCGTCTACGAGCAGG
ATCCCGCCGAGCGCGACCCGAAAGCCACGCGCGAAGCGTTTGCCGCCTTCAAGGCACTGGTCGACAAATTCCCGAACAGC
AAGTACACGCCGGACGCCGTCGACAGGATGAAGTACCTGATCAACGCGATGGCGAAGTACGAAGTGTACGTGGCGCGCTA
TTACTACCGCCGCGGCGCCTACCTCGCCGCCGCCAACCGCGCACAGGAAGCCGTGCGCGACTACCGCGATTCGCCGTCGG
TCGAGGAAGCGCTGTGGATCATGGCGCGCAGCTATGACAAGCTGGGCAACACCACGCTGCGCGACGACACGATGCGCGTG
TTCAAGCTGAACTTCCCGAATTCGAAGTTCCTCGAGGAAGGCGCGCCGAAGCAGGAGCGCAAGTGGTGGAAGTTCTGGAG
CTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.496

99.625

0.483
  comL Neisseria gonorrhoeae MS11

48.12

99.625

0.479