Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RAB72_RS18220 Genome accession   NZ_CP132979
Coordinates   3594250..3594987 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ARS-C101     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3589250..3599987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB72_RS18205 clpC 3589704..3592277 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  RAB72_RS18210 yfiH 3592407..3593138 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  RAB72_RS18215 rluD 3593135..3594115 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RAB72_RS18220 comL 3594250..3594987 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RAB72_RS18225 raiA 3595258..3595599 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RAB72_RS18230 pheL 3595703..3595750 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RAB72_RS18235 pheA 3595849..3597009 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  RAB72_RS18240 tyrA 3597052..3598173 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RAB72_RS18245 aroF 3598184..3599254 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RAB72_RS18250 yfiL 3599464..3599829 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=797577 RAB72_RS18220 WP_000197686.1 3594250..3594987(+) (comL) [Escherichia coli strain ARS-C101]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=797577 RAB72_RS18220 WP_000197686.1 3594250..3594987(+) (comL) [Escherichia coli strain ARS-C101]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376