Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q7C01_RS27455 Genome accession   NZ_CP132975
Coordinates   6259116..6259757 (-) Length   213 a.a.
NCBI ID   WP_266469338.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6254116..6264757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS27425 (Q7C01_27425) - 6254429..6254935 (+) 507 WP_184913023.1 HNH endonuclease -
  Q7C01_RS27430 (Q7C01_27430) - 6255048..6256007 (-) 960 WP_030852280.1 SPFH domain-containing protein -
  Q7C01_RS27435 (Q7C01_27435) - 6256140..6256571 (-) 432 WP_266469328.1 NfeD family protein -
  Q7C01_RS27440 (Q7C01_27440) - 6256667..6257464 (-) 798 WP_266469331.1 ABC transporter ATP-binding protein -
  Q7C01_RS27445 (Q7C01_27445) - 6257626..6258414 (+) 789 WP_184913018.1 hypothetical protein -
  Q7C01_RS27450 (Q7C01_27450) - 6258717..6258959 (-) 243 WP_030852293.1 chaplin -
  Q7C01_RS27455 (Q7C01_27455) vraR 6259116..6259757 (-) 642 WP_266469338.1 response regulator transcription factor Regulator
  Q7C01_RS27460 (Q7C01_27460) - 6259750..6260895 (-) 1146 WP_266469341.1 GAF domain-containing sensor histidine kinase -
  Q7C01_RS27465 (Q7C01_27465) - 6261132..6261830 (+) 699 WP_306689489.1 SDR family oxidoreductase -
  Q7C01_RS27470 (Q7C01_27470) - 6261827..6262876 (+) 1050 WP_266469347.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  Q7C01_RS27475 (Q7C01_27475) - 6263231..6263953 (+) 723 WP_266469350.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23000.21 Da        Isoelectric Point: 4.9993

>NTDB_id=797512 Q7C01_RS27455 WP_266469338.1 6259116..6259757(-) (vraR) [Streptomyces sp. FXY-T5]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVDRAEELRPDVILMDVKMPGMDGVDALRRLRELDNPAR
VLVVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLTQEESNSGTGRAGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=797512 Q7C01_RS27455 WP_266469338.1 6259116..6259757(-) (vraR) [Streptomyces sp. FXY-T5]
GTGGCTGACGCGATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACGTTCCTTGAAGTGCA
GGACGACATCGAGGTCGTCGGAGAGGCGGCGGACGGGGCCGAAGGGGTCGACCGCGCCGAGGAGTTGAGGCCCGACGTCA
TCCTCATGGACGTAAAGATGCCGGGCATGGACGGCGTCGACGCCCTGCGCAGACTCCGCGAGCTGGACAACCCCGCGCGC
GTGCTGGTCGTCACCAGCTTCACCGAGCAGCGGACGGTGGTCCCCGCCCTGCGTGCCGGCGCCGCCGGATACGTCTACAA
GGACGTCGACCCCGACGCCCTCGCCGGAGCCATCCGATCGGTCCACGCCGGGCATATCCTCCTCCAGCCGGAGGTCGCCG
GCGCCCTGCTGACGCAGGAGGAGTCCAACTCGGGCACGGGAAGGGCGGGTTCGCTCACCGAGCGGGAGCGCGAGGTGCTC
GGCCTCATAGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCGCTCGTCCTCTCCGAGAAGACCGTCAAGACCCACGT
CTCGAACATCCTGATGAAACTCGACCTGGCCGACCGGACGCAGGCCGCGCTGTGGGCCGTTCGCCATGGCGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

47.17

99.531

0.469
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.39