Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PZB78_RS15440 Genome accession   NZ_CP119073
Coordinates   3003160..3003882 (-) Length   240 a.a.
NCBI ID   WP_142396176.1    Uniprot ID   -
Organism   Bacillus halotolerans strain SW207     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2998160..3008882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB78_RS15405 (PZB78_15395) fliW 2998302..2998733 (-) 432 WP_024123020.1 flagellar assembly protein FliW -
  PZB78_RS15410 (PZB78_15400) - 2998754..2999329 (-) 576 WP_254517897.1 DUF6470 family protein -
  PZB78_RS15415 (PZB78_15405) flgL 2999376..3000272 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  PZB78_RS15420 (PZB78_15410) flgK 3000282..3001805 (-) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  PZB78_RS15425 (PZB78_15415) flgN 3001824..3002306 (-) 483 WP_254517898.1 flagellar protein FlgN -
  PZB78_RS15430 (PZB78_15420) flgM 3002321..3002587 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  PZB78_RS15435 (PZB78_15425) - 3002667..3003086 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  PZB78_RS15440 (PZB78_15430) comFC 3003160..3003882 (-) 723 WP_142396176.1 double zinc ribbon domain-containing protein Machinery gene
  PZB78_RS15445 (PZB78_15435) - 3003846..3004142 (-) 297 WP_024123028.1 late competence development ComFB family protein -
  PZB78_RS15450 (PZB78_15440) comFA 3004188..3005585 (-) 1398 WP_106021953.1 ATP-dependent helicase ComFA Machinery gene
  PZB78_RS15455 (PZB78_15445) - 3005692..3006537 (-) 846 WP_106019639.1 DegV family protein -
  PZB78_RS15460 (PZB78_15450) degU 3006634..3007323 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PZB78_RS15465 (PZB78_15455) degS 3007406..3008563 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27052.24 Da        Isoelectric Point: 8.4157

>NTDB_id=797502 PZB78_RS15440 WP_142396176.1 3003160..3003882(-) (comFC) [Bacillus halotolerans strain SW207]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNDFSSEFSAVYPDKRLVLVPIPLSEERKVERGFNQSQMLAECL
NRPILNPLIRLNNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGEAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=797502 PZB78_RS15440 WP_142396176.1 3003160..3003882(-) (comFC) [Bacillus halotolerans strain SW207]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAACAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGTGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCGATAATAAGCGCTTTTAAAAATGACTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCCATTCCGTTAAGCGAAGAACGGAAAGTTGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCCTCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGCTCGGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCGAAGCTGGTTCTGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

75.833

100

0.758