Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Q7C01_RS09320 Genome accession   NZ_CP132975
Coordinates   2110654..2111337 (+) Length   227 a.a.
NCBI ID   WP_306688313.1    Uniprot ID   -
Organism   Streptomyces sp. FXY-T5     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2105654..2116337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C01_RS09300 (Q7C01_09300) - 2105927..2106157 (-) 231 WP_030845472.1 hypothetical protein -
  Q7C01_RS09305 (Q7C01_09305) - 2106600..2108723 (+) 2124 WP_266469160.1 type IIA DNA topoisomerase subunit B -
  Q7C01_RS09310 (Q7C01_09310) - 2108985..2109509 (+) 525 WP_266469158.1 DUF1453 domain-containing protein -
  Q7C01_RS09315 (Q7C01_09315) - 2109506..2110657 (+) 1152 WP_306688312.1 sensor histidine kinase -
  Q7C01_RS09320 (Q7C01_09320) vraR 2110654..2111337 (+) 684 WP_306688313.1 response regulator transcription factor Regulator
  Q7C01_RS09325 (Q7C01_09325) - 2111406..2111963 (+) 558 WP_306688314.1 DUF485 domain-containing protein -
  Q7C01_RS09330 (Q7C01_09330) - 2111960..2113552 (+) 1593 WP_266469151.1 cation acetate symporter -
  Q7C01_RS09335 (Q7C01_09335) - 2113622..2114302 (-) 681 WP_266469295.1 response regulator -
  Q7C01_RS09340 (Q7C01_09340) - 2114302..2115975 (-) 1674 WP_266469149.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24046.54 Da        Isoelectric Point: 5.3863

>NTDB_id=797486 Q7C01_RS09320 WP_306688313.1 2110654..2111337(+) (vraR) [Streptomyces sp. FXY-T5]
MTQEAEPKSARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGEEAVALVAGLAPDVVLMDLRMPRCDGVEATRRIRAD
HPGTQVVVLTTFADDESLFPALAAGARGYLTKDAGGDEIVRAVHSVLSGDAGLSPGIQRRLLERLSETERGPAASSEPPD
GLTAREMEVLLLIAEGLSNAEIARRLHVSTATVKTHINNLFTKTRLKDRAQAVRYAYAKGLVRPPVG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=797486 Q7C01_RS09320 WP_306688313.1 2110654..2111337(+) (vraR) [Streptomyces sp. FXY-T5]
ATGACGCAGGAGGCCGAGCCGAAGTCCGCTCGGGTGGTGGTCGCCGACGACCAGACCGTGGTGCGGGAGGGCATCGTGAT
GCTGCTCGGTCTGCTGCCAGGGATCGAGGTCGTCGGCGCCGCGGGGGACGGGGAGGAGGCGGTGGCGCTCGTCGCCGGAC
TCGCCCCGGACGTGGTGCTGATGGACCTGCGGATGCCGCGATGCGACGGAGTGGAGGCGACCCGCAGGATCCGCGCGGAT
CACCCCGGGACGCAGGTCGTGGTGCTCACCACGTTCGCGGACGACGAGTCGCTGTTCCCGGCGCTGGCGGCGGGCGCGCG
CGGCTATCTCACCAAGGACGCGGGCGGGGACGAGATCGTGCGAGCCGTGCACAGCGTGCTGTCCGGAGACGCGGGCCTCT
CCCCGGGCATCCAGAGACGCCTGCTGGAGCGCCTGTCGGAGACCGAGCGCGGACCGGCCGCGTCGTCTGAGCCACCGGAC
GGGCTCACGGCCCGGGAGATGGAGGTGCTGCTCCTCATCGCGGAGGGGCTCAGCAACGCCGAGATCGCCAGGAGACTGCA
TGTCTCCACGGCGACCGTGAAGACCCATATCAACAACCTCTTCACCAAGACCAGGCTCAAGGACCGTGCGCAGGCCGTGC
GTTACGCCTACGCGAAAGGACTCGTGCGGCCACCAGTGGGTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-216)

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.535

94.714

0.374
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

98.678

0.361