Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PZB81_RS03735 Genome accession   NZ_CP119047
Coordinates   803018..803419 (+) Length   133 a.a.
NCBI ID   WP_275113493.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain N2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 798018..808419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZB81_RS03710 (PZB81_03710) - 799437..799841 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  PZB81_RS03715 (PZB81_03715) - 799990..800223 (+) 234 WP_002456242.1 DUF1146 family protein -
  PZB81_RS03720 (PZB81_03720) murA 800333..801598 (+) 1266 WP_002474608.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PZB81_RS03725 (PZB81_03725) fabZ 801632..802069 (+) 438 WP_002494218.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PZB81_RS03730 (PZB81_03730) - 802387..802827 (-) 441 WP_001829935.1 YwpF-like family protein -
  PZB81_RS03735 (PZB81_03735) ssb 803018..803419 (+) 402 WP_275113493.1 single-stranded DNA-binding protein Machinery gene
  PZB81_RS03740 (PZB81_03740) - 803865..804524 (+) 660 WP_002474611.1 transglycosylase family protein -
  PZB81_RS03745 (PZB81_03745) tenA 804809..805498 (+) 690 WP_002494217.1 thiaminase II -
  PZB81_RS03750 (PZB81_03750) thiD 805491..806312 (+) 822 WP_002494216.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PZB81_RS03755 (PZB81_03755) thiM 806305..807093 (+) 789 WP_002494215.1 hydroxyethylthiazole kinase -
  PZB81_RS03760 (PZB81_03760) thiE 807099..807737 (+) 639 WP_032603839.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 15469.37 Da        Isoelectric Point: 5.2661

>NTDB_id=797379 PZB81_RS03735 WP_275113493.1 803018..803419(+) (ssb) [Staphylococcus epidermidis strain N2]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHIYF

Nucleotide


Download         Length: 402 bp        

>NTDB_id=797379 PZB81_RS03735 WP_275113493.1 803018..803419(+) (ssb) [Staphylococcus epidermidis strain N2]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTTGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTATTTCT
AA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

98.496

0.729
  ssb Staphylococcus aureus MW2

73.282

98.496

0.722