Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   RA292_RS08665 Genome accession   NZ_CP132912
Coordinates   1682273..1682704 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1677273..1687704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS08645 spoVS 1677834..1678094 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  RA292_RS08650 tdh 1678360..1679403 (+) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  RA292_RS08655 kbl 1679416..1680594 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  RA292_RS08660 miaB 1680742..1682271 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  RA292_RS08665 ymcA 1682273..1682704 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  RA292_RS08670 cotE 1682966..1683511 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  RA292_RS08675 hexA 1683644..1686220 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=797199 RA292_RS08665 WP_003231834.1 1682273..1682704(+) (ymcA) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=797199 RA292_RS08665 WP_003231834.1 1682273..1682704(+) (ymcA) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1