Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RA292_RS07680 Genome accession   NZ_CP132912
Coordinates   1480666..1481691 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1475666..1486691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS07645 ylbE 1475966..1476205 (+) 240 WP_003232231.1 YlbE-like family protein -
  RA292_RS07650 ylbF 1476321..1476770 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  RA292_RS07655 ylbG 1476825..1477097 (+) 273 WP_009967171.1 YlbG family protein -
  RA292_RS07660 rsmD 1477420..1477974 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RA292_RS07665 coaD 1477979..1478464 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  RA292_RS07670 spoVV 1478475..1479701 (-) 1227 WP_306649527.1 dipicolinic acid transporter SpoVV -
  RA292_RS07675 ylbK 1479882..1480664 (+) 783 WP_003232221.1 patatin family protein -
  RA292_RS07680 sepM 1480666..1481691 (+) 1026 WP_003245451.1 protease DdcP Regulator
  RA292_RS07685 tmcAL 1481708..1482955 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  RA292_RS07690 - 1482930..1483136 (-) 207 WP_306649529.1 hypothetical protein -
  RA292_RS07695 ylbN 1483164..1483682 (+) 519 WP_003232214.1 DUF177 domain-containing protein -
  RA292_RS07700 rpmF 1483704..1483883 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  RA292_RS07705 gerR 1484029..1484610 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  RA292_RS07710 ylbP 1484667..1485149 (-) 483 WP_003244940.1 N-acetyltransferase -
  RA292_RS07715 panEA 1485309..1486205 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=797188 RA292_RS07680 WP_003245451.1 1480666..1481691(+) (sepM) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=797188 RA292_RS07680 WP_003245451.1 1480666..1481691(+) (sepM) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402