Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   RA292_RS07650 Genome accession   NZ_CP132912
Coordinates   1476321..1476770 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471321..1481770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS07610 ctaE 1471338..1471961 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  RA292_RS07615 ctaF 1471964..1472296 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  RA292_RS07620 ctaG 1472323..1473216 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  RA292_RS07625 ylbA 1473248..1473610 (-) 363 WP_003232238.1 YugN family protein -
  RA292_RS07630 ylbB 1473750..1474196 (+) 447 WP_003221362.1 CBS domain-containing protein -
  RA292_RS07635 ylbC 1474280..1475320 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  RA292_RS07640 ylbD 1475552..1475950 (+) 399 WP_003232233.1 YlbD family protein -
  RA292_RS07645 ylbE 1475966..1476205 (+) 240 WP_003232231.1 YlbE-like family protein -
  RA292_RS07650 ylbF 1476321..1476770 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  RA292_RS07655 ylbG 1476825..1477097 (+) 273 WP_009967171.1 YlbG family protein -
  RA292_RS07660 rsmD 1477420..1477974 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RA292_RS07665 coaD 1477979..1478464 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  RA292_RS07670 spoVV 1478475..1479701 (-) 1227 WP_306649527.1 dipicolinic acid transporter SpoVV -
  RA292_RS07675 ylbK 1479882..1480664 (+) 783 WP_003232221.1 patatin family protein -
  RA292_RS07680 sepM 1480666..1481691 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=797187 RA292_RS07650 WP_003221370.1 1476321..1476770(+) (ylbF) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=797187 RA292_RS07650 WP_003221370.1 1476321..1476770(+) (ylbF) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1