Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYW44_RS04240 Genome accession   NZ_CP118982
Coordinates   900871..901290 (+) Length   139 a.a.
NCBI ID   WP_021339937.1    Uniprot ID   -
Organism   Staphylococcus equorum strain DSM 20674     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 895871..906290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW44_RS04210 atpD 895908..897320 (+) 1413 WP_021339775.1 F0F1 ATP synthase subunit beta -
  PYW44_RS04215 - 897340..897744 (+) 405 WP_002507082.1 F0F1 ATP synthase subunit epsilon -
  PYW44_RS04220 - 898068..898301 (+) 234 WP_002507083.1 DUF1146 family protein -
  PYW44_RS04225 murA 898408..899673 (+) 1266 WP_021339774.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PYW44_RS04230 fabZ 899731..900171 (+) 441 WP_002507085.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PYW44_RS04235 - 900240..900680 (-) 441 WP_002507086.1 YwpF-like family protein -
  PYW44_RS04240 ssb 900871..901290 (+) 420 WP_021339937.1 single-stranded DNA-binding protein Machinery gene
  PYW44_RS04245 - 901774..902454 (+) 681 WP_002507088.1 transglycosylase family protein -
  PYW44_RS04250 tenA 902844..903533 (+) 690 WP_021339938.1 thiaminase II -
  PYW44_RS04255 thiD 903526..904347 (+) 822 WP_021339939.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PYW44_RS04260 thiM 904340..905131 (+) 792 WP_031266140.1 hydroxyethylthiazole kinase -
  PYW44_RS04265 thiE 905131..905769 (+) 639 WP_021339941.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16259.49 Da        Isoelectric Point: 4.8624

>NTDB_id=797136 PYW44_RS04240 WP_021339937.1 900871..901290(+) (ssb) [Staphylococcus equorum strain DSM 20674]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=797136 PYW44_RS04240 WP_021339937.1 900871..901290(+) (ssb) [Staphylococcus equorum strain DSM 20674]
ATGATAAATAACATCGTCATTGTAGGAAGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597