Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYW40_RS04150 Genome accession   NZ_CP118979
Coordinates   867889..868287 (+) Length   132 a.a.
NCBI ID   WP_011275249.1    Uniprot ID   A0A5B2YX53
Organism   Staphylococcus haemolyticus strain DSM 20263     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 862889..873287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW40_RS04120 atpD 863036..864448 (+) 1413 WP_057504772.1 F0F1 ATP synthase subunit beta -
  PYW40_RS04125 - 864469..864870 (+) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  PYW40_RS04130 - 864998..865231 (+) 234 WP_011275245.1 DUF1146 family protein -
  PYW40_RS04135 murA 865336..866601 (+) 1266 WP_033079610.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PYW40_RS04140 fabZ 866641..867078 (+) 438 WP_011275247.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PYW40_RS04145 - 867258..867701 (-) 444 WP_011275248.1 YwpF-like family protein -
  PYW40_RS04150 ssb 867889..868287 (+) 399 WP_011275249.1 single-stranded DNA-binding protein Machinery gene
  PYW40_RS04155 - 868626..869333 (+) 708 WP_011275250.1 transglycosylase family protein -
  PYW40_RS04160 tenA 869622..870311 (+) 690 WP_011275251.1 thiaminase II -
  PYW40_RS04165 thiD 870304..871125 (+) 822 WP_016931211.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PYW40_RS04170 thiM 871118..871909 (+) 792 WP_011275253.1 hydroxyethylthiazole kinase -
  PYW40_RS04175 thiE 871911..872549 (+) 639 WP_011275254.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15141.05 Da        Isoelectric Point: 4.7942

>NTDB_id=797105 PYW40_RS04150 WP_011275249.1 867889..868287(+) (ssb) [Staphylococcus haemolyticus strain DSM 20263]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=797105 PYW40_RS04150 WP_011275249.1 867889..868287(+) (ssb) [Staphylococcus haemolyticus strain DSM 20263]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YX53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742