Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYW31_RS03920 Genome accession   NZ_CP118976
Coordinates   843986..844405 (+) Length   139 a.a.
NCBI ID   WP_046837793.1    Uniprot ID   A0A1S2MGH6
Organism   Staphylococcus succinus strain DSM 14617     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 838986..849405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW31_RS03890 atpD 839134..840546 (+) 1413 WP_046837799.1 F0F1 ATP synthase subunit beta -
  PYW31_RS03895 - 840566..840970 (+) 405 WP_046837798.1 F0F1 ATP synthase subunit epsilon -
  PYW31_RS03900 - 841199..841432 (+) 234 WP_046837797.1 DUF1146 family protein -
  PYW31_RS03905 murA 841534..842799 (+) 1266 WP_046837796.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PYW31_RS03910 fabZ 842857..843294 (+) 438 WP_046837795.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PYW31_RS03915 - 843353..843796 (-) 444 WP_046837794.1 YwpF-like family protein -
  PYW31_RS03920 ssb 843986..844405 (+) 420 WP_046837793.1 single-stranded DNA-binding protein Machinery gene
  PYW31_RS03925 - 844883..845554 (+) 672 WP_046837792.1 transglycosylase family protein -
  PYW31_RS03930 tenA 845878..846567 (+) 690 WP_046837791.1 thiaminase II -
  PYW31_RS03935 thiD 846560..847381 (+) 822 WP_046837790.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PYW31_RS03940 thiM 847371..848162 (+) 792 WP_046837789.1 hydroxyethylthiazole kinase -
  PYW31_RS03945 thiE 848166..848804 (+) 639 WP_046837788.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15906.19 Da        Isoelectric Point: 6.7062

>NTDB_id=797068 PYW31_RS03920 WP_046837793.1 843986..844405(+) (ssb) [Staphylococcus succinus strain DSM 14617]
MINNIVIVGRLTKAPKIFEKEGGKLATFCVAVTRNYKDKHQNTICDYLYCKAFGKIASNIEKYINQGSLVGITGQMQSRK
FTKEGQTHFVSEIYIETIKFMSPQSTVETEKVFEPFQLEPNHESLDEITVQQNDIYETV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=797068 PYW31_RS03920 WP_046837793.1 843986..844405(+) (ssb) [Staphylococcus succinus strain DSM 14617]
ATGATAAATAATATCGTCATTGTAGGACGACTTACTAAAGCTCCAAAAATATTTGAAAAGGAGGGCGGTAAATTAGCTAC
ATTTTGTGTAGCAGTAACTAGAAACTATAAGGATAAGCATCAAAATACGATTTGTGACTATTTATATTGTAAAGCATTTG
GGAAGATAGCCAGTAATATTGAAAAATATATCAACCAAGGTTCACTGGTAGGTATTACAGGACAAATGCAATCACGTAAA
TTTACAAAAGAAGGACAGACACACTTTGTATCAGAAATTTATATTGAAACCATCAAATTTATGTCTCCACAATCAACAGT
TGAAACAGAAAAGGTATTTGAGCCATTCCAACTAGAACCCAACCATGAGTCATTAGATGAAATAACTGTACAACAAAATG
ATATATATGAAACTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2MGH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

62.698

90.647

0.568
  ssb Staphylococcus aureus MW2

72.381

75.54

0.547