Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   RA106_RS04870 Genome accession   NZ_CP132900
Coordinates   927354..928424 (-) Length   356 a.a.
NCBI ID   WP_014608300.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CICC 20372     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 922354..933424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA106_RS04855 (RA106_04870) pstB 923079..923837 (+) 759 WP_011681133.1 phosphate ABC transporter ATP-binding protein PstB -
  RA106_RS04860 (RA106_04875) phoU 923865..924518 (+) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  RA106_RS04865 (RA106_04880) - 924652..927192 (+) 2541 WP_024704105.1 M1 family metallopeptidase -
  RA106_RS04870 (RA106_04885) xerS 927354..928424 (-) 1071 WP_014608300.1 tyrosine recombinase XerS Machinery gene
  RA106_RS04875 (RA106_04890) - 928649..929638 (-) 990 WP_024704106.1 lipoate--protein ligase -
  RA106_RS04880 (RA106_04895) - 929821..930489 (+) 669 WP_014608301.1 hypothetical protein -
  RA106_RS04885 (RA106_04900) - 930431..930871 (+) 441 WP_223899653.1 hypothetical protein -
  RA106_RS04890 (RA106_04905) glgP 930977..933241 (-) 2265 WP_024704107.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41519.67 Da        Isoelectric Point: 9.6822

>NTDB_id=797068 RA106_RS04870 WP_014608300.1 927354..928424(-) (xerS) [Streptococcus thermophilus strain CICC 20372]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=797068 RA106_RS04870 WP_014608300.1 927354..928424(-) (xerS) [Streptococcus thermophilus strain CICC 20372]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATATAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTGAATATGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826