Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QU709_RS17935 Genome accession   NZ_CP132593
Coordinates   4064684..4066093 (+) Length   469 a.a.
NCBI ID   WP_232031767.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4059684..4071093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS17920 (QU709_17930) - 4060788..4061720 (-) 933 WP_306499867.1 Ppx/GppA phosphatase family protein -
  QU709_RS17925 (QU709_17935) - 4061846..4062637 (+) 792 WP_306504592.1 hypothetical protein -
  QU709_RS17930 (QU709_17940) - 4062695..4064467 (-) 1773 WP_306499868.1 BACON domain-containing protein -
  QU709_RS17935 (QU709_17945) radA/sms 4064684..4066093 (+) 1410 WP_232031767.1 DNA repair protein RadA Machinery gene
  QU709_RS17940 (QU709_17950) disA 4066175..4067299 (+) 1125 WP_232031766.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QU709_RS17945 (QU709_17955) - 4067410..4068267 (-) 858 WP_306499869.1 hypothetical protein -
  QU709_RS17950 (QU709_17960) - 4068442..4069113 (+) 672 WP_306499870.1 phosphatase PAP2 family protein -
  QU709_RS17955 (QU709_17965) - 4069117..4069791 (-) 675 WP_306499871.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49687.77 Da        Isoelectric Point: 8.0022

>NTDB_id=796798 QU709_RS17935 WP_232031767.1 4064684..4066093(+) (radA/sms) [Streptomyces sp. YU58 strain SX92]
MATRTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMSQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVLEVADIGDALRVLPRSRRREAPRDDEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=796798 QU709_RS17935 WP_232031767.1 4064684..4066093(+) (radA/sms) [Streptomyces sp. YU58 strain SX92]
ATGGCCACCCGTACCAAGACCGCCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCATGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGTACGACGACACCGGGCC
GCGTCACGACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCAGGCAGGCGACGGCTCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGGGGCCTGGTGCCCGGCGCCGTGGTGCTCGTCGCGGGCGAGCCGGGCGTGGGCAAGTCCACCCT
GCTCCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACCCTCTATGTGACCGGCGAGGAGTCGGCCAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAAGGCGATCGACGACCATCTGTACCTCGCCGCCGAGACCGACCTGGCCGCCGTGCTG
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCCGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGTCCCAGGTGCGCGAGGTGGCCGGGGCCCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCGCGCCTGCTGGAGCACCTCGTGGACGTGGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGCCTGCGCCTCGTACGCGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGCGCCGAACCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTCGTCGCCGAGGTCCAGGCTCTCACCGTCGACTCCCAGATC
CCCTCGCCCCGGCGGACCACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCCG
GATCAGCGCCCTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGTTGTCGGAGCCCGCCGCGGACCTGG
CCGTGGCGCTCGCCCTGGCGTCCGCGGCCAGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTCGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGACGGCTCGCCGAGGCCCACCGTCTGGGCTTCACCCACGCCCTCGT
GCCGGGCGACCCGGGCAAGGTCCCGGCGGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGAGGGTGCTTC
CGCGCTCGCGTCGCAGAGAGGCCCCACGGGACGACGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

43.333

95.949

0.416
  radA Streptococcus pneumoniae R6

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

43.333

95.949

0.416
  radA Streptococcus mitis SK321

43.333

95.949

0.416
  radA Streptococcus mitis NCTC 12261

43.333

95.949

0.416
  radA Streptococcus pneumoniae TIGR4

43.333

95.949

0.416