Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   QU709_RS11430 Genome accession   NZ_CP132593
Coordinates   2613155..2615374 (-) Length   739 a.a.
NCBI ID   WP_306498898.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2608155..2620374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS11400 (QU709_11395) rnc 2608980..2609792 (-) 813 WP_306498895.1 ribonuclease III -
  QU709_RS11405 (QU709_11400) rpmF 2609812..2609985 (-) 174 WP_006139588.1 50S ribosomal protein L32 -
  QU709_RS11410 (QU709_11405) - 2609988..2610641 (-) 654 WP_232032139.1 YceD family protein -
  QU709_RS11415 (QU709_11410) - 2610793..2611881 (-) 1089 WP_306498896.1 ATP synthase F0 subunit B -
  QU709_RS11420 (QU709_11415) coaD 2611939..2612418 (-) 480 WP_306504509.1 pantetheine-phosphate adenylyltransferase -
  QU709_RS11425 (QU709_11420) rsmD 2612445..2613047 (-) 603 WP_306498897.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QU709_RS11430 (QU709_11425) recG/mmsA 2613155..2615374 (-) 2220 WP_306498898.1 ATP-dependent DNA helicase RecG Machinery gene
  QU709_RS11435 (QU709_11430) - 2615543..2617372 (+) 1830 WP_306498899.1 HSP90 family protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80285.82 Da        Isoelectric Point: 6.1967

>NTDB_id=796779 QU709_RS11430 WP_306498898.1 2613155..2615374(-) (recG/mmsA) [Streptomyces sp. YU58 strain SX92]
MDLVLASQGPLEQPLKAVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFA
SAKAPRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKDLLPGTRAMFAGKVSLFNRRLQLAHPAYELLRGDAEETVETWA
GALIPIYPATAKLESWKIGKAIQTVLPSAQDALDPLPDSLREGRGLVELPEALLKIHRPHTKADIEDARSRLKWDEAFVL
QVALARRRHADSQLPAVPRKPSPDGLLAAFDDRLPFTLTDGQQKVSKEIFDDLATDHPMHRLLQGEVGSGKTMVALRAML
AVVDAGGQAAMLAPTEVLAQQHHRSIVEMMGELAEGGMLGGAEQATKVVLLTGSMGTAARRQAMLDLATGEAGIVIGTHA
LIEDRVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVV
PAADKPHFLARAWDRVREEVENGHQAYVVCPRIGDEEDDPKKSAKKKSPEDEAEKRPPLAVLEVADHLAKGPLNGLRVEV
LHGRMHPDDKDAVMRRFAAGETHVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPE
ASPARQRLNSVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQEATAVVEADPELTGLPGL
RTALDALLDEEREQYLEKG

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=796779 QU709_RS11430 WP_306498898.1 2613155..2615374(-) (recG/mmsA) [Streptomyces sp. YU58 strain SX92]
ATGGATCTCGTGCTCGCATCGCAAGGACCACTGGAACAACCGCTGAAGGCGGTGCTCGGACCCGCCACCGCGAAGGTGAT
GGCCGAGCACCTCGGCCTGCACACCGTCGGCGACCTCCTGCACCACTATCCGCGCAGGTACGAGGAGCGCGGCCAGCTCA
CCCACCTGGCCGATCTCCCGATGGACGAGCACGTCACGGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACACCTTCGCC
TCCGCCAAGGCACCCCGGGGCAAGGGCCAGCGGCTGGAGGTCACCATCACCGACGGCAGCGGCCGCCTCCAACTGGTCTT
CTTCGGCAACGGCGTCCACAAGCCTCACAAGGACCTCCTGCCGGGCACCCGCGCGATGTTCGCGGGCAAGGTCTCCCTGT
TCAACCGCCGCCTCCAACTGGCCCATCCCGCCTACGAGTTGCTGCGAGGCGACGCGGAGGAGACGGTCGAGACCTGGGCC
GGCGCCCTCATCCCGATCTACCCCGCCACCGCCAAACTGGAGTCCTGGAAGATCGGCAAGGCGATCCAGACGGTGCTGCC
CAGCGCCCAGGACGCCCTCGACCCCCTCCCCGACTCCCTCCGTGAGGGCCGGGGCCTGGTCGAGCTCCCCGAGGCCCTCC
TCAAGATCCACCGCCCGCACACCAAGGCCGACATCGAGGACGCCCGCTCCCGCCTCAAGTGGGACGAGGCCTTCGTCCTC
CAGGTCGCCCTCGCCCGCCGCCGGCACGCGGACTCCCAACTCCCGGCGGTACCGCGGAAACCGTCCCCGGACGGCCTCCT
GGCCGCCTTCGACGACCGCCTGCCCTTCACACTCACCGACGGCCAGCAGAAGGTGTCCAAGGAGATCTTCGACGACCTCG
CGACGGACCACCCGATGCATCGGCTGCTGCAGGGAGAGGTCGGAAGCGGCAAGACAATGGTCGCGCTGCGCGCCATGCTC
GCCGTCGTCGACGCCGGCGGTCAGGCCGCCATGCTCGCGCCCACCGAGGTCCTGGCCCAGCAGCACCACCGCTCGATCGT
GGAGATGATGGGGGAACTCGCCGAGGGCGGGATGCTGGGCGGCGCCGAGCAGGCCACCAAGGTGGTGCTGCTCACCGGCT
CGATGGGCACGGCCGCCCGCCGGCAGGCGATGCTGGACCTCGCCACCGGAGAGGCCGGGATCGTGATCGGCACGCACGCG
CTGATCGAGGACCGCGTCCAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAACAGCACCGCTTCGGCGTCGAACAGCG
CGACGCCCTGCGCGGCAAGGGCAAGCAGCCGCCCCACCTCCTGGTCATGACGGCCACCCCCATCCCGCGCACGGTCGCCA
TGACGGTCTTCGGCGACCTGGAGACCTCCGTCCTCGACCAGCTCCCGGCCGGCCGCTCGCCCATCGCCAGCCATGTCGTC
CCGGCCGCCGACAAGCCCCACTTCCTGGCCCGCGCCTGGGACCGCGTGCGCGAGGAGGTGGAGAACGGCCATCAGGCGTA
CGTCGTGTGCCCGCGCATCGGCGACGAGGAGGACGACCCGAAGAAGTCCGCCAAGAAGAAGTCCCCCGAGGACGAGGCCG
AGAAGCGCCCCCCGCTCGCCGTCCTGGAGGTGGCCGACCACCTGGCCAAGGGGCCGCTGAACGGCCTGCGCGTCGAGGTC
CTGCACGGCCGTATGCACCCCGACGACAAGGACGCGGTCATGCGCCGCTTCGCCGCGGGCGAGACCCACGTCCTGGTCGC
CACCACGGTCATCGAGGTCGGCGTCAACGTCCCGAACGCCACCGCCATGGTGATCATGGACGCCGACCGCTTCGGCGTCT
CCCAGCTCCACCAGCTCCGCGGCCGCGTCGGCCGCGGCTCGGCCCCCGGCCTCTGCCTCCTGGTCACCGAGATGCCGGAG
GCCAGCCCGGCCCGCCAGCGCCTGAACTCCGTGGCCTCGACGCTGGACGGCTTCGAGCTGTCCCGCATCGACCTGGAACA
GCGCCGGGAGGGCGATGTCCTGGGGCAGGCCCAGTCGGGCGCCCGCACCTCCTTGCGCGTCCTCGCCGTGATCGAGGACG
AGGAGATCATCGCGGAGGCGAGACAGGAGGCCACGGCGGTGGTCGAGGCCGATCCCGAGCTGACGGGCCTTCCTGGACTC
CGGACAGCCTTGGACGCCCTTCTGGACGAGGAAAGGGAGCAGTACTTGGAAAAGGGGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(551-626)

DEAD/DEAH box helicase (DEAD)

(282-452)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(65-148)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(654-715)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

38.128

96.888

0.369
  recG/mmsA Streptococcus pneumoniae R36A

38.128

96.888

0.369
  recG Neisseria meningitidis strain C311

39.024

94.317

0.368