Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PYW36_RS07335 Genome accession   NZ_CP118953
Coordinates   1494540..1495433 (-) Length   297 a.a.
NCBI ID   WP_172458448.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain DSM 20454     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1489540..1500433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW36_RS07320 xerC 1490046..1490936 (-) 891 WP_037573324.1 tyrosine recombinase XerC -
  PYW36_RS07325 trmFO 1491058..1492362 (-) 1305 WP_037573322.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PYW36_RS07330 topA 1492375..1494444 (-) 2070 WP_037573320.1 type I DNA topoisomerase -
  PYW36_RS07335 dprA 1494540..1495433 (-) 894 WP_172458448.1 DNA-processing protein DprA Machinery gene
  PYW36_RS07340 sucD 1495705..1496613 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  PYW36_RS07345 sucC 1496634..1497800 (-) 1167 WP_103159284.1 ADP-forming succinate--CoA ligase subunit beta -
  PYW36_RS07350 - 1498025..1498294 (-) 270 WP_037573311.1 hypothetical protein -
  PYW36_RS07355 - 1498373..1499152 (-) 780 WP_037573308.1 ribonuclease HII -
  PYW36_RS07360 ylqF 1499133..1500023 (-) 891 WP_037573306.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33537.85 Da        Isoelectric Point: 9.2689

>NTDB_id=796729 PYW36_RS07335 WP_172458448.1 1494540..1495433(-) (dprA) [Staphylococcus chromogenes strain DSM 20454]
MTSLYLKNSLKMHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPL
PIIDARFPSLLKEIYHPPLLLYCKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALA
HHYALCNNIPTIAVLGFGHFHHYPKHTQTLRTHIDKYAGGLSISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERS
GALITLDQALEQNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=796729 PYW36_RS07335 WP_172458448.1 1494540..1495433(-) (dprA) [Staphylococcus chromogenes strain DSM 20454]
GTGACGTCATTGTATCTAAAAAATTCATTGAAAATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTAC
ATCTCCTGTGAAATCTTTACAATTTGAAATCACACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTT
ACAAAAAATTTTTAGCTTTCCAATCCTTAGACATTGATATCATCCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTC
CCAATCATTGATGCACGATTTCCTTCATTATTAAAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTT
AAATTTATTTAATGATGCGTGTTATTATCCCTTAGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAG
TTGAGTATTTATTACATCAGATGAAGCATCAGCCTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATGCATTAGCC
CATCATTATGCATTGTGTAACAACATCCCTACAATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATAC
TCAAACCCTAAGAACACATATTGATAAATATGCAGGGGGTTTAAGTATCAGCGAATATCCACCAACCACTGCTCCAGCAA
AATTTAGATTTCCTGAACGCAATCGTATCATAAGTGGCTTAAGTAAAGGAGTGCTCGTCACAGAGGCGAAAGAAAGAAGC
GGTGCATTAATAACATTAGATCAAGCGTTAGAACAAAATCGTAATGTTTATGTTTTACCTGGAGATATGTTTAACCCCAA
TACAAAAGGAAATTTATTGCGTGTAAAGGAAGGTGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATA
CGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(80-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.381

98.99

0.519
  dprA Staphylococcus aureus N315

52.041

98.99

0.515