Detailed information NTG0796546

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PX704_RS20680
• Genome accession: NZ_CP118936
• Coordinates: 4234666..4235466 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain RX.G5M15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4229666..4240466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PX704_RS20645 (PX704_20650)	gspH	4229822..4230337 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
PX704_RS20650 (PX704_20655)	gspI	4230334..4230699 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
PX704_RS20655 (PX704_20660)	gspJ	4230696..4231292 (+)	597	WP_136846521.1	type II secretion system minor pseudopilin GspJ	-
PX704_RS20660 (PX704_20665)	gspK	4231289..4232275 (+)	987	WP_251715900.1	type II secretion system minor pseudopilin GspK	-
PX704_RS20665 (PX704_20670)	gspL	4232262..4233455 (+)	1194	WP_251715899.1	type II secretion system protein GspL	-
PX704_RS20670 (PX704_20675)	-	4233448..4233933 (+)	486	WP_025368434.1	type II secretion system protein M	-
PX704_RS20675 (PX704_20680)	-	4233923..4234669 (+)	747	WP_004145897.1	type II secretion system protein N	-
PX704_RS20680 (PX704_20685)	pilD	4234666..4235466 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
PX704_RS20685 (PX704_20690)	hrpB	4235514..4237943 (-)	2430	WP_275107556.1	ATP-dependent helicase HrpB	-
PX704_RS20690 (PX704_20695)	thpR	4238016..4238552 (+)	537	WP_275107557.1	RNA 2',3'-cyclic phosphodiesterase	-
PX704_RS20695 (PX704_20700)	sfsA	4238552..4239268 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
PX704_RS20700 (PX704_20705)	dksA	4239431..4239886 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=796546 PX704_RS20680 WP_004145898.1 4234666..4235466(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain RX.G5M15]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=796546 PX704_RS20680 WP_004145898.1 4234666..4235466(+) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain RX.G5M15]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425