Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PX335_RS16975 Genome accession   NZ_CP118933
Coordinates   3532116..3532745 (+) Length   209 a.a.
NCBI ID   WP_017386993.1    Uniprot ID   A0A3R9R247
Organism   Acinetobacter pittii strain ML4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527116..3537745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX335_RS16960 (PX335_16955) - 3528179..3529162 (-) 984 WP_025466036.1 putative solute-binding protein -
  PX335_RS16965 (PX335_16960) - 3529242..3530057 (-) 816 WP_017386991.1 nucleoside-diphosphate sugar epimerase -
  PX335_RS16970 (PX335_16965) recG 3530078..3532123 (+) 2046 WP_017386992.1 ATP-dependent DNA helicase RecG -
  PX335_RS16975 (PX335_16970) comF 3532116..3532745 (+) 630 WP_017386993.1 phosphoribosyltransferase family protein Machinery gene
  PX335_RS16980 (PX335_16975) mutT 3532747..3533148 (-) 402 WP_017386994.1 NUDIX domain-containing protein -
  PX335_RS16985 (PX335_16980) - 3533163..3533744 (-) 582 WP_017386995.1 TIGR00730 family Rossman fold protein -
  PX335_RS16990 (PX335_16985) - 3533903..3534916 (+) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  PX335_RS16995 (PX335_16990) - 3534989..3535276 (-) 288 WP_017386996.1 STAS domain-containing protein -
  PX335_RS17000 (PX335_16995) - 3535288..3535929 (-) 642 WP_002116826.1 ABC transporter substrate-binding protein -
  PX335_RS17005 (PX335_17000) - 3535956..3536636 (-) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  PX335_RS17010 (PX335_17005) mlaE 3536636..3537412 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24416.62 Da        Isoelectric Point: 10.0953

>NTDB_id=796514 PX335_RS16975 WP_017386993.1 3532116..3532745(+) (comF) [Acinetobacter pittii strain ML4]
MFNFLNFQPLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNHSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIGRGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=796514 PX335_RS16975 WP_017386993.1 3532116..3532745(+) (comF) [Acinetobacter pittii strain ML4]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAGCAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCACTCTGTTCTTG
TGGCTTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTCAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGGGCGTGGTTTCAATCAGTCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9R247

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

82.775

100

0.828
  comF Acinetobacter baumannii D1279779

81.818

100

0.818