Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   O6P42_RS02890 Genome accession   NZ_CP118930
Coordinates   596967..597581 (-) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain V208     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 591967..602581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS02880 (O6P42_02880) aceF 593228..595126 (+) 1899 WP_109169466.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  O6P42_RS02885 (O6P42_02885) lpdA 595394..596821 (+) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  O6P42_RS02890 (O6P42_02890) opaR 596967..597581 (-) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  O6P42_RS02895 (O6P42_02895) hpt 597901..598431 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  O6P42_RS02900 (O6P42_02900) can 598507..599175 (-) 669 WP_005379996.1 carbonate dehydratase -
  O6P42_RS02905 (O6P42_02905) - 599457..601127 (+) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  O6P42_RS02910 (O6P42_02910) - 601378..602295 (+) 918 WP_005380000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=796430 O6P42_RS02890 WP_005379994.1 596967..597581(-) (opaR) [Vibrio alginolyticus strain V208]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=796430 O6P42_RS02890 WP_005379994.1 596967..597581(-) (opaR) [Vibrio alginolyticus strain V208]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCT
GATAACATAGACCTAGACTTACACGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GCACTAACCAGCTGCTAGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAACTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711