Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PXG99_RS17420 Genome accession   NZ_CP118911
Coordinates   3462398..3463783 (+) Length   461 a.a.
NCBI ID   WP_029972824.1    Uniprot ID   A0AAP4DHF4
Organism   Bacillus velezensis strain XRD006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457398..3468783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXG99_RS17400 (PXG99_17400) - 3458545..3459192 (-) 648 WP_007614107.1 YigZ family protein -
  PXG99_RS17405 (PXG99_17405) degS 3459415..3460578 (+) 1164 WP_103042075.1 two-component sensor histidine kinase DegS Regulator
  PXG99_RS17410 (PXG99_17410) degU 3460655..3461344 (+) 690 WP_103042074.1 two-component system response regulator DegU Regulator
  PXG99_RS17415 (PXG99_17415) - 3461442..3462290 (+) 849 WP_003151387.1 DegV family protein -
  PXG99_RS17420 (PXG99_17420) comFA 3462398..3463783 (+) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  PXG99_RS17425 (PXG99_17425) - 3463841..3464125 (+) 285 WP_003151389.1 competence protein ComFB -
  PXG99_RS17430 (PXG99_17430) comFC 3464131..3464820 (+) 690 WP_199449054.1 ComF family protein Machinery gene
  PXG99_RS17435 (PXG99_17435) - 3464894..3465313 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PXG99_RS17440 (PXG99_17440) flgM 3465383..3465649 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PXG99_RS17445 (PXG99_17445) - 3465664..3466146 (+) 483 WP_003151394.1 flagellar protein FlgN -
  PXG99_RS17450 (PXG99_17450) flgK 3466162..3467679 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  PXG99_RS17455 (PXG99_17455) flgL 3467691..3468608 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52662.09 Da        Isoelectric Point: 10.2802

>NTDB_id=796272 PXG99_RS17420 WP_029972824.1 3462398..3463783(+) (comFA) [Bacillus velezensis strain XRD006]
MSEGDSEFSEVRDFFYGRRLLRSEIPFSDQRIKRLTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=796272 PXG99_RS17420 WP_029972824.1 3462398..3463783(+) (comFA) [Bacillus velezensis strain XRD006]
ATGTCCGAAGGTGATTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCGTTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62