Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PYV58_RS20575 Genome accession   NZ_CP118892
Coordinates   4393931..4395499 (+) Length   522 a.a.
NCBI ID   WP_034613557.1    Uniprot ID   A0AAX3PLX3
Organism   Acinetobacter sp. TAC-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4388931..4400499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS20550 (PYV58_20550) thrC 4389183..4390322 (+) 1140 WP_004818568.1 threonine synthase -
  PYV58_RS20555 (PYV58_20555) - 4390387..4391160 (-) 774 WP_034613565.1 hypothetical protein -
  PYV58_RS20560 (PYV58_20560) - 4391170..4391799 (-) 630 WP_034613562.1 hypothetical protein -
  PYV58_RS20565 (PYV58_20565) pbpG 4391971..4393026 (-) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  PYV58_RS20570 (PYV58_20570) - 4393259..4393894 (+) 636 WP_004718392.1 response regulator -
  PYV58_RS20575 (PYV58_20575) pilS 4393931..4395499 (+) 1569 WP_034613557.1 ATP-binding protein Regulator
  PYV58_RS20580 (PYV58_20580) pilR 4395517..4396932 (+) 1416 WP_004818559.1 sigma-54 dependent transcriptional regulator Regulator
  PYV58_RS20585 (PYV58_20585) - 4397136..4398314 (-) 1179 WP_034613554.1 S41 family peptidase -
  PYV58_RS20590 (PYV58_20590) gpmI 4398345..4399892 (-) 1548 WP_034613550.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59628.30 Da        Isoelectric Point: 6.4376

>NTDB_id=796119 PYV58_RS20575 WP_034613557.1 4393931..4395499(+) (pilS) [Acinetobacter sp. TAC-1]
MSPTVTVPIYQTIYRLGTLYSGYRLVIAFCLVIIFLITLEHQPVHYQYPSLYFYSLTAFTLIAALQMMLLKFYPHGVGRQ
FIGFFIVDIPFLSTLVFALNGPNLAISILFVIAVFTANFLLSKNKALFVTLVSVIAIIYQQFLGSFFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACLLLGISPLYAHE
QYHLSSFQPDLYEILKDAMLRDGERFQFESHQSSYTVDIRVQKLIVPHQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAIAQANDLFISSDPEQQTILNQMITKQTIRINNIIKDTLDMAKNKKIHTSKINFQEFVDDLLRHDLGDAQ
EKIKLEIQVDVWIYFDDSHLRQVLINLVRNALRHNDQNAEQILVQTFKNESHVYIDVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPLMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=796119 PYV58_RS20575 WP_034613557.1 4393931..4395499(+) (pilS) [Acinetobacter sp. TAC-1]
ATGTCGCCTACGGTAACGGTTCCCATTTATCAAACAATTTACCGTCTAGGCACACTGTATTCAGGGTATAGATTGGTTAT
TGCCTTTTGCTTAGTCATTATTTTTCTGATTACCCTTGAACATCAACCCGTACATTACCAATATCCCAGCTTATATTTTT
ATTCTCTAACCGCATTTACGCTGATCGCAGCATTACAAATGATGCTGCTCAAGTTCTACCCGCATGGGGTTGGACGACAA
TTTATTGGTTTTTTTATTGTTGATATTCCCTTTCTAAGTACCTTGGTATTTGCCCTCAATGGGCCAAATTTAGCCATCAG
TATTTTGTTCGTGATTGCCGTTTTTACCGCGAATTTTCTGCTGAGTAAAAATAAAGCGCTATTCGTAACACTGGTTTCTG
TGATTGCGATTATTTACCAACAGTTTTTAGGCAGCTTCTTCGATTTTTCAAATTTAAATAATATTAGTAACAGTGCCTTA
TTGGCTTTTTTATTTTTTATGGTCTATGGCATTGGGCAGATTGCAATTAATCGCTTCCAAGTTTTAGAGTCGTTAAATAC
CTATCAATCTCTTGAATTATTTAAGTTACAGAACATTAACCGCTATATTTTAGAACAGATTGAAGTCGGTTATTTGGTGC
TCGATGAAAAGTGCAAAATTATCGTCAGTAACCCTGCTGCCTGTTTACTTTTGGGTATTTCACCACTTTACGCGCATGAG
CAATATCATTTATCCAGCTTTCAACCGGACTTATATGAAATCTTAAAAGATGCCATGTTACGTGATGGAGAACGCTTCCA
ATTTGAATCGCATCAGTCCTCGTATACGGTCGACATTCGCGTACAAAAATTGATTGTTCCGCATCAAGCACTCACGCTTT
TGGTCCTCGAAGATGCACAAAAAATTAATCAAAAGGTACAACAGCTCAAACTTGCTGCACTTGGTCAATTGTCCGCCAGT
ATTGCCCATGAAATTCGCAATCCACTTGCTGCCATTGCGCAGGCCAATGATCTCTTTATCAGCAGTGATCCAGAACAACA
AACCATTTTAAATCAAATGATTACCAAACAGACCATCCGTATCAATAATATTATTAAAGATACCTTAGATATGGCAAAAA
ATAAAAAGATCCATACCTCGAAAATTAATTTTCAAGAATTTGTTGATGACTTATTACGCCATGATTTAGGGGATGCTCAG
GAAAAAATCAAATTAGAAATTCAAGTTGATGTTTGGATCTATTTTGATGATTCTCATCTTCGACAAGTTTTAATCAATTT
AGTCCGTAATGCATTACGTCATAATGATCAAAATGCTGAACAGATTTTAGTGCAAACGTTTAAAAATGAATCACACGTAT
ATATCGATGTGATTGATTATGGGAAAGGCGTCACAAAACAAGATCTTTCGCAATTATTTCAGCCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAGACGATATGCGAAGCGAATCAAGCGAAACTAATTTACGTAGAGCA
AAAACAACAAGGGGCGTGCTTCCGTATCGAATGCCCACTCATGGATTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-520)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.594

98.084

0.575