Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PYV58_RS02000 Genome accession   NZ_CP118892
Coordinates   443469..444098 (-) Length   209 a.a.
NCBI ID   WP_034614395.1    Uniprot ID   -
Organism   Acinetobacter sp. TAC-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438469..449098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYV58_RS01965 (PYV58_01965) mlaE 438621..439400 (+) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  PYV58_RS01970 (PYV58_01970) - 439400..440077 (+) 678 WP_004816841.1 outer membrane lipid asymmetry maintenance protein MlaD -
  PYV58_RS01975 (PYV58_01975) - 440099..440719 (+) 621 WP_004816842.1 ABC transporter substrate-binding protein -
  PYV58_RS01980 (PYV58_01980) - 440747..441034 (+) 288 WP_034614405.1 toluene tolerance protein -
  PYV58_RS01985 (PYV58_01985) - 441150..442163 (-) 1014 WP_004816845.1 magnesium and cobalt transport protein CorA -
  PYV58_RS01990 (PYV58_01990) - 442322..442939 (+) 618 WP_034614402.1 TIGR00730 family Rossman fold protein -
  PYV58_RS01995 (PYV58_01995) - 443018..443416 (+) 399 WP_034614399.1 NUDIX domain-containing protein -
  PYV58_RS02000 (PYV58_02000) comF 443469..444098 (-) 630 WP_034614395.1 phosphoribosyltransferase family protein Machinery gene
  PYV58_RS02005 (PYV58_02005) recG 444319..446364 (-) 2046 WP_034614392.1 ATP-dependent DNA helicase RecG -
  PYV58_RS02010 (PYV58_02010) - 446424..447248 (+) 825 WP_034614388.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24445.60 Da        Isoelectric Point: 9.5349

>NTDB_id=796094 PYV58_RS02000 WP_034614395.1 443469..444098(-) (comF) [Acinetobacter sp. TAC-1]
MLQFINRVLHKSVQSLSPCLLCGTDRQQQHSLCNTCWNELPWYKQHIERHQHQIVCAHRYDFPIDRIIQVYKYEQQLQYQ
TLLAQSLLNLSLPKIQAIVPMPISTARLKERGYNQMLIIAKIMARQLNIPVWQPVIREAQHSQKGLSRIERLENIEYQFK
MIKTEKRKYKKVLIIDDVVTTGSSIHALTHALENLGCQQIYSVCIAAAQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=796094 PYV58_RS02000 WP_034614395.1 443469..444098(-) (comF) [Acinetobacter sp. TAC-1]
ATGCTCCAATTTATCAATCGAGTTCTCCATAAAAGCGTACAAAGCCTTTCCCCTTGCCTACTTTGTGGAACAGATCGACA
ACAACAGCATTCCCTTTGTAACACGTGTTGGAACGAACTTCCTTGGTATAAGCAGCATATAGAACGGCATCAACACCAGA
TTGTTTGTGCTCACCGTTACGACTTCCCAATTGATCGCATCATCCAAGTCTATAAATATGAACAACAACTGCAATATCAG
ACACTATTGGCACAAAGTTTATTGAATTTAAGCCTACCTAAAATTCAAGCCATTGTTCCTATGCCAATTTCTACTGCTCG
TTTAAAAGAACGTGGCTACAATCAAATGCTGATTATCGCCAAAATCATGGCAAGGCAATTAAATATCCCAGTATGGCAAC
CCGTGATTCGAGAAGCACAACATTCACAAAAAGGTTTAAGTAGAATTGAGCGCTTAGAAAATATTGAATATCAATTTAAA
ATGATCAAAACAGAAAAAAGAAAATATAAAAAAGTACTGATTATTGATGATGTCGTGACCACAGGCAGTTCAATTCATGC
TTTAACCCATGCTTTAGAAAACTTGGGCTGCCAGCAGATTTATAGCGTCTGCATTGCCGCAGCTCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

57.692

99.522

0.574
  comF Acinetobacter baumannii D1279779

57.212

99.522

0.569