Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   PYH53_RS02875 Genome accession   NZ_CP118860
Coordinates   581974..582543 (+) Length   189 a.a.
NCBI ID   WP_000872881.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7075     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 576974..587543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH53_RS02850 (PYH53_02850) cysE 578187..578834 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  PYH53_RS02855 (PYH53_02855) cysS 578818..580218 (+) 1401 WP_000631966.1 cysteine--tRNA ligase -
  PYH53_RS02860 (PYH53_02860) - 580211..580615 (+) 405 WP_000370185.1 Mini-ribonuclease 3 -
  PYH53_RS02865 (PYH53_02865) rlmB 580623..581369 (+) 747 WP_000390338.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PYH53_RS02870 (PYH53_02870) - 581369..581893 (+) 525 WP_000664732.1 NYN domain-containing protein -
  PYH53_RS02875 (PYH53_02875) sigH 581974..582543 (+) 570 WP_000872881.1 RNA polymerase sigma factor Regulator
  PYH53_RS02880 (PYH53_02880) rpmG 582658..582801 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  PYH53_RS02885 (PYH53_02885) secE 582857..583039 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  PYH53_RS02890 (PYH53_02890) nusG 583052..583600 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  PYH53_RS02895 (PYH53_02895) rplK 583781..584203 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  PYH53_RS02900 (PYH53_02900) rplA 584411..585103 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  PYH53_RS02905 (PYH53_02905) rplJ 585375..585875 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  PYH53_RS02910 (PYH53_02910) rplL 585918..586286 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  PYH53_RS02915 (PYH53_02915) - 586461..587069 (+) 609 WP_000020306.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23096.97 Da        Isoelectric Point: 9.6924

>NTDB_id=795911 PYH53_RS02875 WP_000872881.1 581974..582543(+) (sigH) [Staphylococcus aureus strain 7075]
MKYDLTTQDSTIKRNNAINDKDFEKLVMNLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=795911 PYH53_RS02875 WP_000872881.1 581974..582543(+) (sigH) [Staphylococcus aureus strain 7075]
TTGAAATATGATTTGACAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGAATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTTATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979