Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   PYH64_RS08495 Genome accession   NZ_CP118842
Coordinates   1809786..1810361 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 7049     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804786..1815361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH64_RS08465 (PYH64_08465) - 1805249..1806187 (+) 939 WP_002486594.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PYH64_RS08470 (PYH64_08470) - 1806541..1807098 (-) 558 WP_002491612.1 GNAT family N-acetyltransferase -
  PYH64_RS08475 (PYH64_08475) - 1807328..1807543 (+) 216 WP_001831694.1 NINE protein -
  PYH64_RS08480 (PYH64_08480) - 1808127..1808615 (+) 489 WP_050546620.1 N-acetyltransferase -
  PYH64_RS08495 (PYH64_08495) comK/comK1 1809786..1810361 (-) 576 WP_001829272.1 competence protein ComK Regulator
  PYH64_RS08500 (PYH64_08500) - 1810576..1810794 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  PYH64_RS08505 (PYH64_08505) - 1810872..1811858 (-) 987 WP_002446122.1 lipoate--protein ligase -
  PYH64_RS08510 (PYH64_08510) - 1812063..1812248 (+) 186 WP_001829339.1 DUF2187 family protein -
  PYH64_RS08515 (PYH64_08515) - 1812254..1812856 (+) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  PYH64_RS08520 (PYH64_08520) - 1812958..1814463 (-) 1506 WP_237621610.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=795803 PYH64_RS08495 WP_001829272.1 1809786..1810361(-) (comK/comK1) [Staphylococcus epidermidis strain 7049]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=795803 PYH64_RS08495 WP_001829272.1 1809786..1810361(-) (comK/comK1) [Staphylococcus epidermidis strain 7049]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGTTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743