Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PYH54_RS07600 Genome accession   NZ_CP118830
Coordinates   1598567..1599253 (-) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7054     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593567..1604253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH54_RS07580 (PYH54_07585) rpsT 1594481..1594732 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  PYH54_RS07585 (PYH54_07590) holA 1594777..1595751 (-) 975 WP_001282561.1 DNA polymerase III subunit delta -
  PYH54_RS07590 (PYH54_07595) comEC 1595808..1598009 (-) 2202 WP_001641560.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PYH54_RS07595 (PYH54_07600) - 1598014..1598475 (-) 462 WP_000439693.1 ComE operon protein 2 -
  PYH54_RS07600 (PYH54_07605) comEA 1598567..1599253 (-) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  PYH54_RS07605 (PYH54_07610) - 1599293..1600009 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  PYH54_RS07610 (PYH54_07615) rsfS 1600012..1600365 (-) 354 WP_001088020.1 ribosome silencing factor -
  PYH54_RS07615 (PYH54_07620) yqeK 1600366..1600950 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  PYH54_RS07620 (PYH54_07625) nadD 1600940..1601509 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  PYH54_RS07625 (PYH54_07630) yhbY 1601512..1601802 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  PYH54_RS07630 (PYH54_07635) aroE 1601806..1602612 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  PYH54_RS07635 (PYH54_07640) yqeH 1602626..1603726 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=795642 PYH54_RS07600 WP_001788928.1 1598567..1599253(-) (comEA) [Staphylococcus aureus strain 7054]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=795642 PYH54_RS07600 WP_001788928.1 1598567..1599253(-) (comEA) [Staphylococcus aureus strain 7054]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969