Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   HIY_RS03780 Genome accession   NZ_AP022867
Coordinates   724618..725157 (-) Length   179 a.a.
NCBI ID   WP_005654843.1    Uniprot ID   A0A0H3PFD4
Organism   Haemophilus influenzae strain 2018-Y40     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 719618..730157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIY_RS03750 (HIY_07200) fdx 720021..720362 (+) 342 WP_005656373.1 ISC system 2Fe-2S type ferredoxin -
  HIY_RS03755 (HIY_07210) iscX 720362..720556 (+) 195 WP_005656371.1 Fe-S cluster assembly protein IscX -
  HIY_RS03760 (HIY_07220) - 720607..721221 (-) 615 WP_005656369.1 YfgM family protein -
  HIY_RS03765 (HIY_07230) hisS 721239..722510 (-) 1272 WP_005656367.1 histidine--tRNA ligase -
  HIY_RS03770 (HIY_07240) ispG 722520..723626 (-) 1107 WP_005656366.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  HIY_RS03775 (HIY_07250) - 723635..724546 (-) 912 WP_005656363.1 RodZ family helix-turn-helix domain-containing protein -
  HIY_RS03780 (HIY_07260) pilF/pilF2 724618..725157 (-) 540 WP_005654843.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  HIY_RS03785 (HIY_07270) - 725258..726409 (-) 1152 WP_005656361.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  HIY_RS03790 (HIY_07280) - 726656..727534 (+) 879 WP_005656360.1 D-alanyl-D-alanine carboxypeptidase family protein -
  HIY_RS03795 (HIY_07290) - 727899..728780 (+) 882 WP_005656358.1 metal ABC transporter substrate-binding protein -
  HIY_RS03800 (HIY_07300) - 728780..729700 (+) 921 WP_005630123.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20586.20 Da        Isoelectric Point: 8.2626

>NTDB_id=79564 HIY_RS03780 WP_005654843.1 724618..725157(-) (pilF/pilF2) [Haemophilus influenzae strain 2018-Y40]
MKTISKQLSAVIFPFIFSACVSQSASNLNHQAAAKARVELALSYLQQNNPQLAKINLDKALQHDKNYYLVHSALAHYYQQ
QGEIENAHREYEIAVNLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIVLCAYSAQKMDIYQQT
LEKLRQIDGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=79564 HIY_RS03780 WP_005654843.1 724618..725157(-) (pilF/pilF2) [Haemophilus influenzae strain 2018-Y40]
ATGAAAACAATAAGTAAACAACTAAGTGCGGTTATTTTTCCTTTTATTTTTTCTGCCTGCGTTTCACAATCTGCATCTAA
CTTAAATCATCAAGCTGCCGCTAAAGCGCGTGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAATTTAGACAAAGCACTTCAACACGATAAAAATTACTATCTCGTGCATTCAGCACTTGCACATTATTATCAACAA
CAAGGGGAAATAGAGAATGCACATCGTGAATATGAAATAGCCGTAAACCTTAATCATAAACAAGGCGATGTGCATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAACAAGCCCAGCAACAATTTGAATTAGCACTTAATTCGCCGAATT
ATTATCATCAAGCAGATACATTTGAAAATATCGTGCTTTGTGCTTATTCCGCGCAAAAAATGGATATTTATCAGCAAACA
TTAGAAAAATTACGTCAAATCGATGGAAAACGTGCGGAAAAATTCAATAGTCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PFD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

97.765

100

0.978
  pilF Glaesserella parasuis strain SC1401

44.693

100

0.447

Multiple sequence alignment