Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   Q9L40_RS16805 Genome accession   NZ_CP132190
Coordinates   2516578..2517222 (+) Length   214 a.a.
NCBI ID   WP_029628248.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2511578..2522222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS16795 (Q9L40_16795) - 2511768..2513867 (+) 2100 WP_181712976.1 PTS sugar transporter subunit IIC/EAL domain-containing protein -
  Q9L40_RS16800 (Q9L40_16800) - 2513839..2516202 (-) 2364 WP_305798791.1 DNA polymerase II -
  Q9L40_RS16805 (Q9L40_16805) letA 2516578..2517222 (+) 645 WP_029628248.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  Q9L40_RS16810 (Q9L40_16810) uvrC 2517222..2519054 (+) 1833 WP_142739386.1 excinuclease ABC subunit UvrC -
  Q9L40_RS16815 (Q9L40_16815) pgsA 2519102..2519659 (+) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q9L40_RS16840 (Q9L40_16840) - 2520551..2521669 (+) 1119 WP_001190447.1 GGDEF domain-containing protein -
  Q9L40_RS16845 (Q9L40_16845) - 2521666..2522151 (-) 486 WP_142739387.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23728.46 Da        Isoelectric Point: 6.3442

>NTDB_id=795639 Q9L40_RS16805 WP_029628248.1 2516578..2517222(+) (letA) [Vibrio cholerae strain DRC187]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVNSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=795639 Q9L40_RS16805 WP_029628248.1 2516578..2517222(+) (letA) [Vibrio cholerae strain DRC187]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCCGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTAGAGGCAACCAAGAAGCTGTTACGTGTTAATCCAGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
TCCGGATGAAATGGTCAATGCGATCCGTATCGTTAACAGCGGTCAGCGTTATATTTCTCCAGAGATTGCGCAGCAAATGG
CGTTGAGCCAGTTTTCTCCCGCCTCTGAAAACCCTTTTGCTGATCTCTCTGAACGCGAATTGCAGATCATGTTGATGATC
ACCAAAGGCCAGAAGGTGACGGACATTTCCGAACAGCTCAGCTTGAGCCCGAAAACCGTCAACAGCTACCGCTACCGTTT
GTTCGCCAAACTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509