Detailed information NTG0795609

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: Q9L40_RS12245
• Genome accession: NZ_CP132190
• Coordinates: 1525351..1526520 (+)
• Length: 389 a.a.
• NCBI ID: WP_119564864.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain DRC187
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1520351..1531520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9L40_RS12210 (Q9L40_12210)	-	1521187..1521657 (-)	471	WP_000224703.1	Dps family protein	-
Q9L40_RS12215 (Q9L40_12215)	-	1521828..1522157 (-)	330	WP_001117041.1	DUF2500 domain-containing protein	-
Q9L40_RS12220 (Q9L40_12220)	-	1522361..1522729 (+)	369	WP_001289440.1	hypothetical protein	-
Q9L40_RS12225 (Q9L40_12225)	-	1523186..1523488 (+)	303	WP_305799454.1	hypothetical protein	-
Q9L40_RS12230 (Q9L40_12230)	-	1523605..1524234 (+)	630	WP_305798996.1	lysoplasmalogenase	-
Q9L40_RS12235 (Q9L40_12235)	-	1524286..1524552 (-)	267	WP_000645838.1	DUF1145 domain-containing protein	-
Q9L40_RS12240 (Q9L40_12240)	rsmD	1524549..1525148 (-)	600	WP_305798995.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
Q9L40_RS12245 (Q9L40_12245)	pilA	1525351..1526520 (+)	1170	WP_119564864.1	signal recognition particle-docking protein FtsY	Machinery gene
Q9L40_RS12250 (Q9L40_12250)	ftsE	1526569..1527243 (+)	675	WP_000617863.1	cell division ATP-binding protein FtsE	-
Q9L40_RS12255 (Q9L40_12255)	ftsX	1527233..1528228 (+)	996	WP_000279335.1	permease-like cell division protein FtsX	-
Q9L40_RS12260 (Q9L40_12260)	rpoH	1528398..1529258 (+)	861	WP_000184357.1	RNA polymerase sigma factor RpoH	-
Q9L40_RS12265 (Q9L40_12265)	sthA	1529469..1530869 (-)	1401	WP_142733561.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 42504.20 Da
• Isoelectric Point: 4.4974

>NTDB_id=795609 Q9L40_RS12245 WP_119564864.1 1525351..1526520(+) (pilA) [Vibrio cholerae strain DRC187]
MTEKKKRGLLSWLGFGDEEKSQTTVTDTQTQDEPQSQADVEAVAIQAETALTETETETETETETETETAAVESARIVEQE
KPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLRDGEALYG
LLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQVWGERNQ
VPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAGTGQNAI
SQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1170 bp

>NTDB_id=795609 Q9L40_RS12245 WP_119564864.1 1525351..1526520(+) (pilA) [Vibrio cholerae strain DRC187]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGATGAAGAGAAAAGCCAAACCACTGTAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAGCGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCGCGGTTGAATCTGCACGTATTGTTGAACAAGAA
AAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGCTTGAGCCGCACCAAAGCGAATATCGGCGCTGGCTTCTTTGG
CCTGTTTAAAGGCAAAAAGATTGATGATGACCTATTCGAAGAGCTCGAAGAACAACTGCTGATTGCCGATGTCGGCATGG
ATACGACCAGCAAAATTATCGCTAATTTGACCGCCAAAGCTTCTCGCCAGCAACTGCGTGATGGGGAAGCGCTGTACGGT
CTGCTCAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTTATCGATACTGAGAAGAAGCCTTATGT
GATCTTGATGGTGGGCGTGAACGGGGTAGGTAAAACCACCACGATCGGTAAACTGGCGAAACAGTTCCAAGCGCAAGGTA
AGAAAGTGATGCTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTGTGGGGAGAGCGCAATCAA
GTGCCTGTGATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGAAGCGGCGAAAGCGCGCGG
GATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAGAGCTGCGCAAGATTGTAC
GCGTGATGAAGAAGATTGACGACAGCGCACCACATGAAATCATGTTGACGCTGGATGCGGGTACCGGACAAAACGCGATC
AGTCAGGCCAAATTGTTTAGTGATGTAGCGCCTATCACCGGCATTACCTTAACCAAGCTTGATGGCACCGCTAAAGGTGG
GGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGAAAATTGACGACTTACGTC
CATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, GTPase domain (SRP54) (186-385)

• SRP54-type protein, helical bundle domain (SRP54_N) (105-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.706	87.404	0.434