Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PYH56_RS07720 Genome accession   NZ_CP118820
Coordinates   1644464..1645339 (-) Length   291 a.a.
NCBI ID   WP_002457371.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 7057     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1639464..1650339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH56_RS07705 (PYH56_07705) xerC 1639769..1640659 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  PYH56_RS07710 (PYH56_07710) trmFO 1640883..1642190 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PYH56_RS07715 (PYH56_07715) topA 1642215..1644284 (-) 2070 WP_002446285.1 type I DNA topoisomerase -
  PYH56_RS07720 (PYH56_07720) dprA 1644464..1645339 (-) 876 WP_002457371.1 DNA-processing protein DprA Machinery gene
  PYH56_RS07725 (PYH56_07725) - 1645664..1645879 (-) 216 Protein_1485 transposase -
  PYH56_RS07730 (PYH56_07730) sucD 1646130..1647038 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  PYH56_RS07735 (PYH56_07735) sucC 1647060..1648226 (-) 1167 WP_162154556.1 ADP-forming succinate--CoA ligase subunit beta -
  PYH56_RS07740 (PYH56_07740) - 1648334..1649104 (-) 771 WP_060545821.1 ribonuclease HII -
  PYH56_RS07745 (PYH56_07745) ylqF 1649109..1649972 (-) 864 WP_060545823.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33946.10 Da        Isoelectric Point: 9.8284

>NTDB_id=795608 PYH56_RS07720 WP_002457371.1 1644464..1645339(-) (dprA) [Staphylococcus epidermidis strain 7057]
MIQHTMLKLYWANFTTAQLHHLTRKYPGFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSLAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLFM

Nucleotide


Download         Length: 876 bp        

>NTDB_id=795608 PYH56_RS07720 WP_002457371.1 1644464..1645339(-) (dprA) [Staphylococcus epidermidis strain 7057]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGGCTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTTTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGAGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.639

98.969

0.57
  dprA Staphylococcus aureus N315

57.639

98.969

0.57