Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Q9L40_RS07880 Genome accession   NZ_CP132190
Coordinates   595712..597376 (+) Length   554 a.a.
NCBI ID   WP_305799276.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590712..602376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS07860 (Q9L40_07860) dnaK 591779..593686 (-) 1908 WP_000516147.1 molecular chaperone DnaK -
  Q9L40_RS07865 (Q9L40_07865) - 593844..593957 (+) 114 WP_001889140.1 hypothetical protein -
  Q9L40_RS07870 (Q9L40_07870) grpE 593950..594552 (-) 603 WP_118089964.1 nucleotide exchange factor GrpE -
  Q9L40_RS07875 (Q9L40_07875) nadK 594698..595582 (+) 885 WP_000742830.1 NAD(+) kinase -
  Q9L40_RS07880 (Q9L40_07880) recN 595712..597376 (+) 1665 WP_305799276.1 DNA repair protein RecN Machinery gene
  Q9L40_RS07885 (Q9L40_07885) bamE 597535..597894 (+) 360 WP_181359593.1 outer membrane protein assembly factor BamE -
  Q9L40_RS07890 (Q9L40_07890) - 597979..598284 (-) 306 WP_002020668.1 RnfH family protein -
  Q9L40_RS07895 (Q9L40_07895) - 598287..598721 (-) 435 WP_000815880.1 SRPBCC family protein -
  Q9L40_RS07900 (Q9L40_07900) smpB 598905..599390 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  Q9L40_RS07910 (Q9L40_07910) - 599992..601233 (+) 1242 WP_263219981.1 integrase domain-containing protein -
  Q9L40_RS07915 (Q9L40_07915) - 601239..601541 (+) 303 WP_305799275.1 hypothetical protein -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61292.94 Da        Isoelectric Point: 5.6762

>NTDB_id=795576 Q9L40_RS07880 WP_305799276.1 595712..597376(+) (recN) [Vibrio cholerae strain DRC187]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKTTR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHALPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
STHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=795576 Q9L40_RS07880 WP_305799276.1 595712..597376(+) (recN) [Vibrio cholerae strain DRC187]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTTGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGTCTCGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCCAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACGTTGGGGCAACTGCTGATCAATGTGCATGGCCAACACGCACATC
AGCAACTCATGAAACCGGAATATCAGCTCAGCATGCTTGATCAATACGCAGGTCATGCCGACTTGCTCAAAACCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAACTGCGCGAAAATAGCCAACAAAATCAGGCACAGTT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTAGCACTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
ATAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTGGGCCTTTTACAAAGTGTCAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAGCTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCTCTGATCCAGCTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCTGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGCAAACATCATGCACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGACGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAGACGTTTGTTGCGGCCGCAGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCAGCAAGAC
AGCACGCACTCTTCACCATTAGGTTTTGATGCAGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCATTGCAACCCAT
CGCTAAAGTGGCCTCTGGTGGTGAGCTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTGGTCGGTAAACTGTTACGTAAGTTG
GGCGAGTCAACTCAAGTACTGTGTGTTACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAGGAACAGCGCATTGCTGAACTGGCGCGCTTGC
TCGGAGGGAGCCAAATTACTGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.3

100

0.379
  recN Bacillus subtilis subsp. subtilis str. 168

35.366

100

0.366