Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PYH58_RS14725 Genome accession   NZ_CP118813
Coordinates   2927616..2928143 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain 7061     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2922616..2933143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH58_RS14700 (PYH58_14700) - 2923603..2924424 (+) 822 WP_353463030.1 YqiA/YcfP family alpha/beta fold hydrolase -
  PYH58_RS14705 (PYH58_14705) coaA 2924540..2925442 (+) 903 WP_025906185.1 type I pantothenate kinase -
  PYH58_RS14710 (PYH58_14710) - 2925565..2926410 (-) 846 WP_353463031.1 DUF2785 domain-containing protein -
  PYH58_RS14715 (PYH58_14715) - 2926545..2927078 (+) 534 WP_353463032.1 hypothetical protein -
  PYH58_RS14720 (PYH58_14720) rpsR 2927314..2927556 (-) 243 WP_037589451.1 30S ribosomal protein S18 -
  PYH58_RS14725 (PYH58_14725) ssbA 2927616..2928143 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  PYH58_RS14730 (PYH58_14730) rpsF 2928171..2928464 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  PYH58_RS14735 (PYH58_14735) ychF 2928636..2929736 (-) 1101 WP_204188948.1 redox-regulated ATPase YchF -
  PYH58_RS14740 (PYH58_14740) - 2929740..2929937 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  PYH58_RS14745 (PYH58_14745) - 2929961..2930845 (-) 885 WP_353463033.1 mechanosensitive ion channel family protein -
  PYH58_RS14750 (PYH58_14750) - 2930857..2931693 (-) 837 WP_353463034.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=795514 PYH58_RS14725 WP_025906200.1 2927616..2928143(-) (ssbA) [Mammaliicoccus sciuri strain 7061]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=795514 PYH58_RS14725 WP_025906200.1 2927616..2928143(-) (ssbA) [Mammaliicoccus sciuri strain 7061]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AATGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537