Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Q9L37_RS03430 Genome accession   NZ_CP132187
Coordinates   727888..728613 (-) Length   241 a.a.
NCBI ID   WP_000877198.1    Uniprot ID   Q9KU21
Organism   Vibrio cholerae strain DRC052     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 722888..733613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L37_RS03415 (Q9L37_03415) - 724523..725563 (-) 1041 WP_000595738.1 spermidine/putrescine ABC transporter substrate-binding protein -
  Q9L37_RS03420 (Q9L37_03420) pheA 725745..726920 (-) 1176 WP_000130282.1 prephenate dehydratase -
  Q9L37_RS03425 (Q9L37_03425) hpf 727160..727486 (-) 327 WP_000700176.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  Q9L37_RS03430 (Q9L37_03430) comL 727888..728613 (-) 726 WP_000877198.1 outer membrane protein assembly factor BamD Machinery gene
  Q9L37_RS03435 (Q9L37_03435) rluD 728768..729742 (+) 975 WP_000941107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Q9L37_RS03440 (Q9L37_03440) pgeF 729745..730467 (+) 723 WP_000602844.1 peptidoglycan editing factor PgeF -
  Q9L37_RS03445 (Q9L37_03445) clpC 730592..733165 (+) 2574 WP_001235052.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27875.68 Da        Isoelectric Point: 5.1660

>NTDB_id=795500 Q9L37_RS03430 WP_000877198.1 727888..728613(-) (comL) [Vibrio cholerae strain DRC052]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=795500 Q9L37_RS03430 WP_000877198.1 727888..728613(-) (comL) [Vibrio cholerae strain DRC052]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.589

100

0.386
  comL Neisseria gonorrhoeae MS11

37.759

100

0.378