Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   PYH57_RS08130 Genome accession   NZ_CP118810
Coordinates   1655650..1656720 (-) Length   356 a.a.
NCBI ID   WP_000776417.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7062     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1650650..1661720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH57_RS08090 (PYH57_08080) gcvPA 1650828..1652174 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  PYH57_RS08095 (PYH57_08085) gcvT 1652194..1653285 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  PYH57_RS08100 (PYH57_08090) - 1653444..1653968 (-) 525 WP_353458906.1 shikimate kinase -
  PYH57_RS08105 (PYH57_08095) - 1653958..1654104 (-) 147 WP_001789879.1 hypothetical protein -
  PYH57_RS08110 (PYH57_08100) comGF 1654201..1654698 (-) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  PYH57_RS08115 (PYH57_08105) comGE 1654616..1654915 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  PYH57_RS08120 (PYH57_08110) comGD 1654902..1655347 (-) 446 Protein_1595 competence type IV pilus minor pilin ComGD -
  PYH57_RS08125 (PYH57_08115) comGC 1655325..1655636 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH57_RS08130 (PYH57_08120) comGB 1655650..1656720 (-) 1071 WP_000776417.1 competence type IV pilus assembly protein ComGB Machinery gene
  PYH57_RS08135 (PYH57_08125) comGA 1656692..1657666 (-) 975 WP_250426016.1 competence type IV pilus ATPase ComGA Machinery gene
  PYH57_RS08140 (PYH57_08130) - 1657718..1658341 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  PYH57_RS08145 (PYH57_08135) - 1658338..1658667 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PYH57_RS08150 (PYH57_08140) - 1658667..1659653 (-) 987 WP_000161315.1 ROK family glucokinase -
  PYH57_RS08155 (PYH57_08145) - 1659650..1659853 (-) 204 WP_000087561.1 YqgQ family protein -
  PYH57_RS08160 (PYH57_08150) - 1659834..1661297 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41495.93 Da        Isoelectric Point: 10.1030

>NTDB_id=795463 PYH57_RS08130 WP_000776417.1 1655650..1656720(-) (comGB) [Staphylococcus aureus strain 7062]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKFNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=795463 PYH57_RS08130 WP_000776417.1 1655650..1656720(-) (comGB) [Staphylococcus aureus strain 7062]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTGATTTATAACAAATTTAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAATTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994