Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PYH57_RS04955 Genome accession   NZ_CP118810
Coordinates   1010886..1011872 (+) Length   328 a.a.
NCBI ID   WP_000959277.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1005886..1016872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH57_RS04930 (PYH57_04920) opp4B 1006089..1007051 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  PYH57_RS04935 (PYH57_04925) opp4C 1007063..1007944 (+) 882 WP_001180271.1 oligopeptide ABC transporter permease -
  PYH57_RS04940 (PYH57_04930) trpS 1007986..1008975 (-) 990 WP_000448929.1 tryptophan--tRNA ligase -
  PYH57_RS04945 (PYH57_04935) spxA 1009270..1009665 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  PYH57_RS04950 (PYH57_04940) mecA 1010046..1010765 (+) 720 WP_001217727.1 adaptor protein MecA -
  PYH57_RS04955 (PYH57_04945) coiA 1010886..1011872 (+) 987 WP_000959277.1 competence protein CoiA family protein Machinery gene
  PYH57_RS04960 (PYH57_04950) pepF 1011920..1013728 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  PYH57_RS04965 (PYH57_04955) - 1014306..1015622 (+) 1317 WP_353459284.1 ISL3-like element ISSau8 family transposase -
  PYH57_RS04970 (PYH57_04960) - 1015600..1015668 (-) 69 Protein_969 hypothetical protein -
  PYH57_RS04975 (PYH57_04965) yjbH 1015694..1016500 (-) 807 WP_000896697.1 protease adaptor protein YjbH -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38695.27 Da        Isoelectric Point: 9.5127

>NTDB_id=795453 PYH57_RS04955 WP_000959277.1 1010886..1011872(+) (coiA) [Staphylococcus aureus strain 7062]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALDSKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=795453 PYH57_RS04955 WP_000959277.1 1010886..1011872(+) (coiA) [Staphylococcus aureus strain 7062]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTTAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTTG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGATAGCAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97
  coiA Staphylococcus aureus N315

96.951

100

0.97