Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYH73_RS10405 Genome accession   NZ_CP118808
Coordinates   2096885..2097280 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 7063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2091885..2102280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH73_RS10380 (PYH73_10380) thiE 2092484..2093125 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  PYH73_RS10385 (PYH73_10385) thiM 2093127..2093918 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  PYH73_RS10390 (PYH73_10390) thiD 2093902..2094732 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PYH73_RS10395 (PYH73_10395) tenA 2094725..2095414 (-) 690 WP_000396077.1 thiaminase II -
  PYH73_RS10400 (PYH73_10400) sceD 2095801..2096496 (-) 696 WP_000752004.1 lytic transglycosylase SceD -
  PYH73_RS10405 (PYH73_10405) ssb 2096885..2097280 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  PYH73_RS10410 (PYH73_10410) - 2097474..2097914 (+) 441 WP_353437075.1 YwpF-like family protein -
  PYH73_RS10415 (PYH73_10415) fabZ 2097973..2098413 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PYH73_RS10420 (PYH73_10420) murA 2098447..2099712 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PYH73_RS10425 (PYH73_10425) - 2099823..2100056 (-) 234 WP_000384523.1 DUF1146 family protein -
  PYH73_RS10430 (PYH73_10430) - 2100188..2100280 (-) 93 WP_001790611.1 hypothetical protein -
  PYH73_RS10435 (PYH73_10435) - 2100618..2101022 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=795438 PYH73_RS10405 WP_000932694.1 2096885..2097280(-) (ssb) [Staphylococcus aureus strain 7063]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=795438 PYH73_RS10405 WP_000932694.1 2096885..2097280(-) (ssb) [Staphylococcus aureus strain 7063]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992