Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   PYH68_RS09920 Genome accession   NZ_CP118807
Coordinates   2053184..2053747 (-) Length   187 a.a.
NCBI ID   WP_017722273.1    Uniprot ID   A0A2T4PJ80
Organism   Staphylococcus xylosus strain 7064     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2048184..2058747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH68_RS09895 (PYH68_09875) - 2048759..2048971 (+) 213 WP_029379120.1 NINE protein -
  PYH68_RS09900 (PYH68_09880) - 2049579..2050070 (-) 492 WP_119610852.1 hypothetical protein -
  PYH68_RS09905 (PYH68_09885) - 2051319..2052515 (+) 1197 WP_353422855.1 ATP-grasp domain-containing protein -
  PYH68_RS09920 (PYH68_09900) comK/comK1 2053184..2053747 (-) 564 WP_017722273.1 competence protein ComK Regulator
  PYH68_RS09925 (PYH68_09905) - 2054000..2054218 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  PYH68_RS09930 (PYH68_09910) - 2054318..2055304 (-) 987 WP_042362968.1 lipoate--protein ligase -
  PYH68_RS09935 (PYH68_09915) - 2055504..2055689 (+) 186 WP_002483735.1 DUF2187 family protein -
  PYH68_RS09940 (PYH68_09920) - 2055695..2056297 (+) 603 WP_029379125.1 CPBP family glutamic-type intramembrane protease -
  PYH68_RS09945 (PYH68_09925) - 2056364..2057872 (-) 1509 WP_107562338.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21879.23 Da        Isoelectric Point: 9.5361

>NTDB_id=795395 PYH68_RS09920 WP_017722273.1 2053184..2053747(-) (comK/comK1) [Staphylococcus xylosus strain 7064]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=795395 PYH68_RS09920 WP_017722273.1 2053184..2053747(-) (comK/comK1) [Staphylococcus xylosus strain 7064]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGGCAATATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCTAAAATCATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATTCATTATGTACA
TAATATTAGGCCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGTATGCATCATCAATATTTAAATGGTATATACTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCGATTGATTATACTAAACCACAATTAAATATATATGAAGCATTAGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4PJ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545