Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   PYH68_RS07000 Genome accession   NZ_CP118807
Coordinates   1449030..1450004 (+) Length   324 a.a.
NCBI ID   WP_107543212.1    Uniprot ID   A0A5R9B885
Organism   Staphylococcus xylosus strain 7064     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444030..1455004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH68_RS06965 (PYH68_06955) rpmG 1444139..1444288 (+) 150 WP_002483181.1 50S ribosomal protein L33 -
  PYH68_RS06970 (PYH68_06960) - 1444420..1444962 (+) 543 WP_042362613.1 5-formyltetrahydrofolate cyclo-ligase -
  PYH68_RS06975 (PYH68_06965) - 1444974..1446431 (+) 1458 WP_069794317.1 rhomboid family intramembrane serine protease -
  PYH68_RS06980 (PYH68_06970) - 1446415..1446615 (+) 201 WP_107542787.1 YqgQ family protein -
  PYH68_RS06985 (PYH68_06975) - 1446997..1447983 (+) 987 WP_029377187.1 glucokinase -
  PYH68_RS06990 (PYH68_06980) - 1447983..1448306 (+) 324 WP_042362616.1 MTH1187 family thiamine-binding protein -
  PYH68_RS06995 (PYH68_06985) - 1448308..1448931 (+) 624 WP_042362617.1 MBL fold metallo-hydrolase -
  PYH68_RS07000 (PYH68_06990) comGA 1449030..1450004 (+) 975 WP_107543212.1 competence type IV pilus ATPase ComGA Machinery gene
  PYH68_RS07005 (PYH68_06995) comGB 1449976..1451043 (+) 1068 WP_107543211.1 competence type IV pilus assembly protein ComGB -
  PYH68_RS07010 (PYH68_07000) comGC 1451063..1451380 (+) 318 WP_029377192.1 competence type IV pilus major pilin ComGC Machinery gene
  PYH68_RS07015 (PYH68_07005) comGD 1451361..1451804 (+) 444 WP_234108761.1 competence type IV pilus minor pilin ComGD -
  PYH68_RS07020 (PYH68_07010) - 1451791..1452090 (+) 300 WP_107543122.1 hypothetical protein -
  PYH68_RS07025 (PYH68_07015) comGF 1452074..1452505 (+) 432 WP_326001449.1 competence type IV pilus minor pilin ComGF -
  PYH68_RS07030 (PYH68_07020) - 1452670..1453185 (+) 516 WP_171031808.1 shikimate kinase -
  PYH68_RS07035 (PYH68_07025) gcvT 1453373..1454464 (+) 1092 WP_326030877.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37165.35 Da        Isoelectric Point: 9.3719

>NTDB_id=795389 PYH68_RS07000 WP_107543212.1 1449030..1450004(+) (comGA) [Staphylococcus xylosus strain 7064]
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNVKGERELVYEQITKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL

Nucleotide


Download         Length: 975 bp        

>NTDB_id=795389 PYH68_RS07000 WP_107543212.1 1449030..1450004(+) (comGA) [Staphylococcus xylosus strain 7064]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCCGTTGAACAATTGATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCTGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGTGTTATC
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCACTAGCATATTAAATCAAAGGCTTATTAC
TAACGTAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATATTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R9B885

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

62.654

100

0.627
  comGA Staphylococcus aureus N315

62.654

100

0.627