Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PYH70_RS11320 | Genome accession | NZ_CP118789 |
| Coordinates | 2330435..2330950 (-) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus warneri strain 7068 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2317925..2332718 | 2330435..2330950 | within | 0 |
Gene organization within MGE regions
Location: 2317925..2332718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH70_RS11220 (PYH70_11215) | - | 2317925..2318410 (-) | 486 | WP_002467120.1 | terminase small subunit | - |
| PYH70_RS11225 (PYH70_11220) | - | 2318463..2318765 (-) | 303 | WP_002467101.1 | hypothetical protein | - |
| PYH70_RS11230 (PYH70_11225) | - | 2318758..2319354 (-) | 597 | WP_002467104.1 | hypothetical protein | - |
| PYH70_RS11235 (PYH70_11230) | - | 2319373..2319900 (-) | 528 | WP_031464129.1 | hypothetical protein | - |
| PYH70_RS11240 (PYH70_11235) | - | 2319915..2320259 (-) | 345 | WP_002467111.1 | hypothetical protein | - |
| PYH70_RS11245 (PYH70_11240) | - | 2320545..2321186 (-) | 642 | WP_002467115.1 | pathogenicity island protein | - |
| PYH70_RS11250 (PYH70_11245) | - | 2321188..2321538 (-) | 351 | WP_353422373.1 | hypothetical protein | - |
| PYH70_RS11255 (PYH70_11250) | - | 2321558..2321911 (-) | 354 | WP_002467109.1 | hypothetical protein | - |
| PYH70_RS11260 (PYH70_11255) | - | 2322154..2323521 (-) | 1368 | WP_002467121.1 | DNA primase family protein | - |
| PYH70_RS11265 (PYH70_11260) | - | 2323533..2324402 (-) | 870 | WP_002467116.1 | primase alpha helix C-terminal domain-containing protein | - |
| PYH70_RS11270 (PYH70_11265) | - | 2324491..2324829 (-) | 339 | WP_002467122.1 | hypothetical protein | - |
| PYH70_RS11275 (PYH70_11270) | - | 2324831..2325037 (-) | 207 | WP_002467105.1 | hypothetical protein | - |
| PYH70_RS11280 (PYH70_11275) | - | 2325063..2325194 (-) | 132 | WP_002467113.1 | hypothetical protein | - |
| PYH70_RS11285 (PYH70_11280) | - | 2325207..2325479 (-) | 273 | WP_031464128.1 | hypothetical protein | - |
| PYH70_RS11290 (PYH70_11285) | - | 2325518..2325718 (-) | 201 | WP_002467106.1 | hypothetical protein | - |
| PYH70_RS11295 (PYH70_11290) | - | 2325824..2326744 (+) | 921 | WP_050969315.1 | helix-turn-helix transcriptional regulator | - |
| PYH70_RS11300 (PYH70_11295) | - | 2327112..2327345 (+) | 234 | WP_002466547.1 | hypothetical protein | - |
| PYH70_RS11305 (PYH70_11300) | - | 2327368..2328555 (+) | 1188 | WP_002466544.1 | hypothetical protein | - |
| PYH70_RS11310 (PYH70_11305) | - | 2328782..2330002 (+) | 1221 | WP_002466541.1 | site-specific integrase | - |
| PYH70_RS11315 (PYH70_11310) | rpsR | 2330148..2330390 (-) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| PYH70_RS11320 (PYH70_11315) | ssbA | 2330435..2330950 (-) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| PYH70_RS11325 (PYH70_11320) | rpsF | 2330972..2331268 (-) | 297 | WP_002451521.1 | 30S ribosomal protein S6 | - |
| PYH70_RS11330 (PYH70_11325) | - | 2331644..2332465 (+) | 822 | WP_002466546.1 | GH25 family lysozyme | - |
| PYH70_RS11335 (PYH70_11330) | - | 2332527..2332718 (+) | 192 | WP_002451523.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=795304 PYH70_RS11320 WP_002466536.1 2330435..2330950(-) (ssbA) [Staphylococcus warneri strain 7068]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=795304 PYH70_RS11320 WP_002466536.1 2330435..2330950(-) (ssbA) [Staphylococcus warneri strain 7068]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |