Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PYH63_RS08800 Genome accession   NZ_CP118788
Coordinates   1801795..1802682 (-) Length   295 a.a.
NCBI ID   WP_262609801.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7070     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1796795..1807682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH63_RS08785 (PYH63_08745) xerC 1797300..1798190 (-) 891 WP_026066983.1 tyrosine recombinase XerC -
  PYH63_RS08790 (PYH63_08750) trmFO 1798310..1799614 (-) 1305 WP_096554981.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PYH63_RS08795 (PYH63_08755) topA 1799642..1801711 (-) 2070 WP_096540759.1 type I DNA topoisomerase -
  PYH63_RS08800 (PYH63_08760) dprA 1801795..1802682 (-) 888 WP_262609801.1 DNA-processing protein DprA Machinery gene
  PYH63_RS08805 (PYH63_08765) sucD 1802924..1803829 (-) 906 WP_086427944.1 succinate--CoA ligase subunit alpha -
  PYH63_RS08810 (PYH63_08770) sucC 1803851..1805017 (-) 1167 WP_019165484.1 ADP-forming succinate--CoA ligase subunit beta -
  PYH63_RS08815 (PYH63_08775) - 1806015..1806290 (-) 276 WP_096540753.1 hypothetical protein -
  PYH63_RS08820 (PYH63_08780) - 1806382..1807167 (-) 786 WP_353421184.1 ribonuclease HII -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33386.73 Da        Isoelectric Point: 8.9403

>NTDB_id=795263 PYH63_RS08800 WP_262609801.1 1801795..1802682(-) (dprA) [Staphylococcus delphini strain 7070]
MKQFLLLLLYAGFSTQQLQSYYPKLCTFTGNLPQRIQAFKSMLSHMTSTHIQQKLARLDTLNIHTIEPVLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSANSLGIVGARQHTPYTSQALGTLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHHLSTIGVLGFGHFHHYPKNTQALRQTMEQHHLTISEYPPHTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANINVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=795263 PYH63_RS08800 WP_262609801.1 1801795..1802682(-) (dprA) [Staphylococcus delphini strain 7070]
ATGAAACAATTTCTACTATTATTATTGTACGCTGGATTTTCAACACAACAACTCCAATCCTACTATCCTAAACTTTGTAC
TTTTACAGGAAACTTACCTCAGCGCATTCAAGCCTTCAAATCAATGCTTTCACACATGACGTCAACGCATATTCAACAAA
AGCTCGCACGACTCGATACGCTTAATATTCACACAATTGAACCGGTGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCGCCGTTGTTGAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTCGAACT
GCTTCAACATTCTGCAAATAGTCTTGGCATTGTAGGGGCAAGGCAACATACACCATACACCTCGCAAGCGCTCGGAACAC
TTTTTAACACATTTCAACATTTTCCACTAACTATTATTTCAGGACTGGCACATGGCACAGACGCACTCGCACATCATTAC
GCGATTCGACATCACTTATCCACGATTGGTGTACTTGGCTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAAACGATGGAACAACATCATTTGACCATAAGCGAATATCCACCGCACACGCCTATCGCTAAATTTAGATTTCCTG
AACGCAACCGCATTATTAGTGGTTTGTCGAAAGGGATACTCATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTATATGTACTGCCAGGGGATATGTTTAATGTGCATACGAAAGGCAATAT
GCTACGTGTCAAAGAGGGCGCAGAAATTGTATTATGTGCTCAAGATATTTTGAAAGATTATGCGAATATAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495