Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   PYH72_RS04680 Genome accession   NZ_CP118782
Coordinates   1027823..1028452 (+) Length   209 a.a.
NCBI ID   WP_014613482.1    Uniprot ID   -
Organism   Staphylococcus delphini strain 7072     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022823..1033452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYH72_RS04650 (PYH72_04645) - 1022855..1023580 (+) 726 WP_019166458.1 glutamine amidotransferase -
  PYH72_RS04655 (PYH72_04650) - 1023736..1024734 (-) 999 WP_096542445.1 aromatic acid exporter family protein -
  PYH72_RS04660 (PYH72_04655) map 1024831..1025592 (+) 762 WP_019166460.1 type I methionyl aminopeptidase -
  PYH72_RS04665 (PYH72_04660) - 1025690..1026079 (+) 390 WP_096542447.1 hypothetical protein -
  PYH72_RS04670 (PYH72_04665) liaF 1026092..1026793 (+) 702 WP_096557032.1 cell wall-active antibiotics response protein LiaF -
  PYH72_RS04675 (PYH72_04670) vraS 1026790..1027833 (+) 1044 WP_019166463.1 sensor histidine kinase Regulator
  PYH72_RS04680 (PYH72_04675) vraR 1027823..1028452 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  PYH72_RS04685 (PYH72_04680) - 1028607..1029188 (-) 582 WP_096557031.1 carbonic anhydrase -
  PYH72_RS04690 (PYH72_04685) - 1029221..1030567 (-) 1347 WP_096557029.1 YihY/virulence factor BrkB family protein -
  PYH72_RS04695 (PYH72_04690) - 1030783..1031070 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  PYH72_RS04700 (PYH72_04695) - 1031078..1031536 (-) 459 WP_353418617.1 low molecular weight protein-tyrosine-phosphatase -
  PYH72_RS04705 (PYH72_04700) - 1031670..1031873 (+) 204 WP_019166467.1 DUF1128 family protein -
  PYH72_RS04710 (PYH72_04705) - 1031895..1033127 (+) 1233 WP_353418618.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23484.17 Da        Isoelectric Point: 5.1671

>NTDB_id=795187 PYH72_RS04680 WP_014613482.1 1027823..1028452(+) (vraR) [Staphylococcus delphini strain 7072]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKAHELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=795187 PYH72_RS04680 WP_014613482.1 1027823..1028452(+) (vraR) [Staphylococcus delphini strain 7072]
ATGACAATTAAAGTATTATTTGTTGATGATCATGAAATGGTACGTATAGGGATTTCAAGTTATTTATCAACACAACCCGA
TATCGAAGTCGTGGGGGAAGGCGCCTCAGGTAAGGAAGCGATCGCAAAAGCCCACGAACTGAAACCGGATTTAATATTAA
TGGACTTAGTGATGACAGATATGGACGGCGTGGAAGCGACAATGCAAATTAAGAAAGATCTGCCACATATTAAAGTCGTA
ATGCTGACGAGTTATATTGAAGATAAAGAAGTGTATCGTGCATTAGATGCCGGTGTTGATAGTTATATTTTAAAAACGAC
AAGTGCTAATGATATTGCGGAAGCGGTACGTAAAACGAGTCGTGGTGAGTCTGTATTTGAAGCGGAAGTATTAGTGAAAA
TGCGCAATCGAATGAAGCAACGTGCGGAGTTATATGAATTATTGACTGAGCGCGAGATGGAAATTTTGTTATTGATTTCA
AAAGGCTATTCGAACCAAGAAATTGCGAGTGCGTCACATATTACCATTAAGACGGTAAAGACGCATGTGAGTAATATTTT
AAGTAAACTTGAAGTGCAAGACCGTACGCAAGCAGTCATTTATGCTTTCCAACACGGCTTGATTGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

92.823

100

0.928
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383