Detailed information NTG0795145

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PW274_RS26095
• Genome accession: NZ_CP118775
• Coordinates: 5578041..5578934 (+)
• Length: 297 a.a.
• NCBI ID: WP_016445609.1
• Uniprot ID: A0A1H3L211
• Organism: Delftia tsuruhatensis strain ULwDis3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5573041..5583934

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PW274_RS26065 (PW274_26065)	rpmA	5573062..5573319 (-)	258	WP_012207283.1	50S ribosomal protein L27	-
PW274_RS26070 (PW274_26070)	rplU	5573335..5573646 (-)	312	WP_012207284.1	50S ribosomal protein L21	-
PW274_RS26075 (PW274_26075)	-	5573877..5574806 (+)	930	WP_043789750.1	polyprenyl synthetase family protein	-
PW274_RS26085 (PW274_26085)	pilB	5575043..5576785 (+)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PW274_RS26090 (PW274_26090)	pilC	5576824..5578041 (+)	1218	WP_047326532.1	type II secretion system F family protein	Machinery gene
PW274_RS26095 (PW274_26095)	pilD	5578041..5578934 (+)	894	WP_016445609.1	A24 family peptidase	Machinery gene
PW274_RS26100 (PW274_26100)	coaE	5578949..5579587 (+)	639	WP_016445608.1	dephospho-CoA kinase	-
PW274_RS26105 (PW274_26105)	zapD	5579677..5580432 (+)	756	WP_016445607.1	cell division protein ZapD	-
PW274_RS26110 (PW274_26110)	-	5580432..5580686 (+)	255	WP_016451023.1	DNA gyrase inhibitor YacG	-
PW274_RS26115 (PW274_26115)	-	5580697..5581203 (-)	507	WP_126310903.1	NUDIX domain-containing protein	-
PW274_RS26120 (PW274_26120)	-	5581254..5582210 (-)	957	WP_126310904.1	ATP-binding protein	-
PW274_RS26125 (PW274_26125)	argJ	5582376..5583608 (-)	1233	WP_016451021.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.37 Da
• Isoelectric Point: 6.9135

>NTDB_id=795145 PW274_RS26095 WP_016445609.1 5578041..5578934(+) (pilD) [Delftia tsuruhatensis strain ULwDis3]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=795145 PW274_RS26095 WP_016445609.1 5578041..5578934(+) (pilD) [Delftia tsuruhatensis strain ULwDis3]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
ACATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGTCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCTACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A1H3L211

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407