Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PWO55_RS16885 Genome accession   NZ_CP118770
Coordinates   3380928..3381617 (-) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus velezensis strain IMD4036     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3375928..3386617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO55_RS16850 (PWO55_16810) fliW 3376017..3376448 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  PWO55_RS16855 (PWO55_16815) - 3376478..3377047 (-) 570 WP_024085861.1 DUF6470 family protein -
  PWO55_RS16860 (PWO55_16820) flgL 3377138..3378055 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  PWO55_RS16865 (PWO55_16825) flgK 3378067..3379584 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  PWO55_RS16870 (PWO55_16830) - 3379600..3380082 (-) 483 WP_003151394.1 flagellar protein FlgN -
  PWO55_RS16875 (PWO55_16835) flgM 3380097..3380363 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PWO55_RS16880 (PWO55_16840) - 3380433..3380859 (-) 427 Protein_3288 TIGR03826 family flagellar region protein -
  PWO55_RS16885 (PWO55_16845) comFC 3380928..3381617 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  PWO55_RS16890 (PWO55_16850) - 3381623..3381907 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  PWO55_RS16895 (PWO55_16855) comFA 3381965..3383350 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  PWO55_RS16900 (PWO55_16860) - 3383458..3384306 (-) 849 WP_044052857.1 DegV family protein -
  PWO55_RS16905 (PWO55_16865) degU 3384404..3385093 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PWO55_RS16910 (PWO55_16870) degS 3385170..3386333 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=795075 PWO55_RS16885 WP_197080391.1 3380928..3381617(-) (comFC) [Bacillus velezensis strain IMD4036]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=795075 PWO55_RS16885 WP_197080391.1 3380928..3381617(-) (comFC) [Bacillus velezensis strain IMD4036]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598