Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   PWO55_RS14950 Genome accession   NZ_CP118770
Coordinates   3005317..3005457 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain IMD4036     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000317..3010457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO55_RS14930 (PWO55_14895) - 3000614..3000997 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  PWO55_RS14935 (PWO55_14900) comA 3001019..3001663 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  PWO55_RS14940 (PWO55_14905) comP 3001744..3004047 (-) 2304 WP_207579565.1 histidine kinase Regulator
  PWO55_RS14945 (PWO55_14915) comQ 3004200..3005132 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  PWO55_RS14950 (PWO55_14920) degQ 3005317..3005457 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  PWO55_RS14955 (PWO55_14925) - 3005923..3006264 (+) 342 WP_046560014.1 hypothetical protein -
  PWO55_RS14960 (PWO55_14930) - 3006271..3007491 (-) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  PWO55_RS14965 (PWO55_14935) - 3007621..3009087 (-) 1467 WP_014305722.1 nicotinate phosphoribosyltransferase -
  PWO55_RS14970 (PWO55_14940) - 3009105..3009656 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  PWO55_RS14975 (PWO55_14945) - 3009753..3010151 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=795072 PWO55_RS14950 WP_003152043.1 3005317..3005457(-) (degQ) [Bacillus velezensis strain IMD4036]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=795072 PWO55_RS14950 WP_003152043.1 3005317..3005457(-) (degQ) [Bacillus velezensis strain IMD4036]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891