Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PWO55_RS14935 Genome accession   NZ_CP118770
Coordinates   3001019..3001663 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain IMD4036     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2996019..3006663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO55_RS14900 (PWO55_14865) - 2997204..2997635 (+) 432 WP_046560011.1 Na(+)/H(+) antiporter subunit B -
  PWO55_RS14905 (PWO55_14870) - 2997635..2997976 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  PWO55_RS14910 (PWO55_14875) - 2997969..2999450 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  PWO55_RS14915 (PWO55_14880) - 2999456..2999932 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  PWO55_RS14920 (PWO55_14885) - 2999932..3000216 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  PWO55_RS14925 (PWO55_14890) mnhG 3000200..3000574 (+) 375 WP_046560012.1 monovalent cation/H(+) antiporter subunit G -
  PWO55_RS14930 (PWO55_14895) - 3000614..3000997 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  PWO55_RS14935 (PWO55_14900) comA 3001019..3001663 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  PWO55_RS14940 (PWO55_14905) comP 3001744..3004047 (-) 2304 WP_207579565.1 histidine kinase Regulator
  PWO55_RS14945 (PWO55_14915) comQ 3004200..3005132 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  PWO55_RS14950 (PWO55_14920) degQ 3005317..3005457 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  PWO55_RS14955 (PWO55_14925) - 3005923..3006264 (+) 342 WP_046560014.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=795069 PWO55_RS14935 WP_003152052.1 3001019..3001663(-) (comA) [Bacillus velezensis strain IMD4036]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=795069 PWO55_RS14935 WP_003152052.1 3001019..3001663(-) (comA) [Bacillus velezensis strain IMD4036]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864